Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d07r
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47... 31 1.4
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 30 2.4
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 30 2.4
12_02_0309 - 17342900-17342904,17343860-17343887,17344003-173441... 29 4.2
08_02_0812 - 21444112-21444273,21444374-21444488,21445369-214454... 29 5.6
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 28 7.4
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 28 7.4
12_01_0065 - 558521-558675,558765-558835,558914-558998,559366-55... 28 9.7
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026... 28 9.7
>11_01_0062 -
476027-476044,476791-477195,477287-477574,477653-477830,
478005-478133,478531-478729,478832-478970,479130-479195,
480459-480580,480672-480742,480819-480903,481335-481453,
481577-481687,481945-482117,482375-482446,482768-482862,
483361-483450,483550-483646
Length = 818
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 760 ISXAEKSDGKIYTIHA--DVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDD 605
IS A+ D +Y I+ +V+D+ +G L +D G D+CYDDD
Sbjct: 246 ISLAQSEDSDVYDIYTVKEVDDDTTMEGTSSAPYPLLQ----VDNGDDVCYDDD 295
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 651 VVFRFKSTSYTPFSLRLSLTSACIVYILPSL 743
+V R KS + PFSL SLT + +V+ L L
Sbjct: 156 LVVRTKSVEFMPFSLSFSLTISAVVWFLYGL 186
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 454 KAYKVTENGNKYVLDDKLKAVKQVMFDNFN-VLHYVTLDNEVFKVKETMEK 305
K YK+ +LD KA ++MFDN V H L ++ F+V E M++
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMKIMFDNREWVFHMYMLVDQAFQVFEDMKQ 265
>12_02_0309 -
17342900-17342904,17343860-17343887,17344003-17344122,
17344252-17344413,17344655-17344865,17344980-17345016,
17345965-17346016
Length = 204
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 654 VFRFKSTSYTPFSLRLSLTSACIVYILPSL 743
V + +S Y PFSL L+LT + +V+ L L
Sbjct: 157 VIQSRSVEYMPFSLSLTLTLSAVVWFLYGL 186
>08_02_0812 -
21444112-21444273,21444374-21444488,21445369-21445487,
21446589-21446757,21447082-21447233,21447349-21447492,
21447575-21447687,21448265-21448316,21448408-21448494
Length = 370
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 183 KLSRTWGKCQHFLRKPIHCLYTRWIK 106
K S W Q L +HC Y RWI+
Sbjct: 256 KTSEEWNAAQAQLNGTVHCDYPRWIE 281
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 544 FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 386
FK+Y +D+ISL K+ Y N +K ++ E K + D++L+ K+
Sbjct: 687 FKRYPKGFSDLISLKKIESKGFLY---NKDKDKQLLEWSTKGITDEQLQMTKE 736
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 28.3 bits (60), Expect = 7.4
Identities = 25/100 (25%), Positives = 43/100 (43%)
Frame = -1
Query: 547 SFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNF 368
S++KYG V S + S++ A+ N NKAY G + +M D++
Sbjct: 146 SYRKYGKDWRKVASSIRDRTSEMVEALYNMNKAYLSLPEGTA-----TAAGLIAMMTDHY 200
Query: 367 NVLHYVTLDNEVFKVKETMEKIDFNVKIDYVRLLKSSATE 248
N+L D+E +T K + + + K+S T+
Sbjct: 201 NILDGSNSDHESNGSPKTSRKPRKRGRAKFQSVSKASDTQ 240
>12_01_0065 -
558521-558675,558765-558835,558914-558998,559366-559484,
559570-559718,560116-560157,560413-560484,560788-560897,
561446-561535,561633-561747
Length = 335
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 760 ISXAEKSDGKIYTIHA--DVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDD 605
IS A+ D +Y I+ +V+D+ +G L +D D+CYDDD
Sbjct: 226 ISLAQSEDSDVYDIYTVTEVDDDTTMEGTSSAPYPLLQ----VDNDDDVCYDDD 275
>10_06_0167 +
11401984-11402023,11402024-11402293,11402499-11402632,
11402737-11403663
Length = 456
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 649 VKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD 551
V ++ KG+DL YDD + + + D Y TGD
Sbjct: 243 VSVVTKGKDLYYDDAEILDMVTIDLSSNYLTGD 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,426
Number of Sequences: 37544
Number of extensions: 322809
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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