Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d07r
         (790 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK025577-1|BAB15176.1|  724|Homo sapiens protein ( Homo sapiens ...    35   0.29 
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   4.7  

>AK025577-1|BAB15176.1|  724|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21924 fis, clone HEP04086. ).
          Length = 724

 Score = 35.1 bits (77), Expect = 0.29
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 308 FHSLFHFKY--FIIQSDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFVSFIVVC 466
           +HSL H+KY  ++I  D V    ++K N+F   +  +  VF ++    V ++ VC
Sbjct: 637 YHSLHHYKYHVYLICKDEVLSSHLLKKNVFQNVKETLAIVFWSVLKRVVKYMCVC 691


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 533 IFFKAFISGFIYIYPVIASYVYRAVIIIT*IPSFVQNFDCGV*I*IYFVYAFFSSIIVNI 712
           IF   FI  +IY+Y  I  Y+Y  +     +  F+  + C + I +Y     F+ I + +
Sbjct: 17  IFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYIC-LYIYLYIYLYIFTYIYIYL 75

Query: 713 SVYCVYLAV-AFLCV 754
            ++ +YL +  ++C+
Sbjct: 76  HIF-IYLHIFIYICI 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,358,102
Number of Sequences: 237096
Number of extensions: 1802304
Number of successful extensions: 3636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3629
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)