Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d07f
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    32   0.068
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    31   0.21 
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.48 
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    29   0.83 
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    28   1.1  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    28   1.5  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.4  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   4.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.4  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   4.4  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    26   4.4  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   5.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.8  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.8  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = +2

Query: 344 IYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKY 523
           ++ + +DGI++      +F++   F+  + +L +  G D     T  N     T  G   
Sbjct: 379 LFPSGSDGIHLVVDEKSNFREEN-FQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVK 437

Query: 524 VLDDKLKAVKQVMFDNFN-VLHYVTLDNEVFKVKETMEKIDFN 649
              D  K VK +M  N+N V+ +     E   +   M K+D N
Sbjct: 438 GPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMN 480


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 473 VTNDNKAYKVTENG--NKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEVFKV-KETMEKID 643
           V N N  +K+T+    N   +D+    + +  +DN     +V LD+E+  + KE  EK +
Sbjct: 466 VFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNEKYN 525

Query: 644 F 646
           F
Sbjct: 526 F 526


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 398  FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK--YVLDDKLKAVKQVMFDN 571
            F  Y  F  D + +   N   +F+ +    ++Y V E+GN   YVL D  + + QV   N
Sbjct: 1001 FIAYIRFYVDTV-VNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQN 1059

Query: 572  F 574
            F
Sbjct: 1060 F 1060


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = -3

Query: 625 LFHFKYFIIQSDI----VQYIEVIKHNL--FDGFQFIIQNVFVTIFSDFVSFIVVCYG 470
           LFHF  F I S +      Y + I H+   F   + I +  FVT+  DFV    + +G
Sbjct: 417 LFHFLLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFG 474


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 664 RNRFNIKIDFFHSLFHFKYFIIQSDIVQYIEVIKHNLFDGFQFI-IQNVFV 515
           RN FN  +DF   +F  +  +++      +EV+K+ L + +  + + N++V
Sbjct: 469 RNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMNIYDLLELPNLYV 519


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 276 KSTSYTPFSLRLSLTSACIVYILPSLFSALDITKAPT 166
           ++T     S +LS +S  I  + PSL S   +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 380 YIHISRHC*LRISCCHHHNINPFLC 306
           +IH S HC      C +H INP +C
Sbjct: 18  HIHFSHHC------CENHFINPLVC 36


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = +2

Query: 431 ISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEV 610
           I  + ++ SD       ++         +KY +D+ +K + +V  D++ +L   +  NE+
Sbjct: 54  IDWSNLSHSDFVQCGVYEDSTNTWLAGASKYKIDE-IKTLPKVPRDHYIILCDSSESNEI 112

Query: 611 FKVKETMEKIDFNVKS 658
            K  + +   DF+  S
Sbjct: 113 AKFTQVVHSFDFSSDS 128


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 261 TPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEAVTLS 82
           TP +     TS  ++Y    + S    T   TT +SV Y+ST        +S+   VT +
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584

Query: 81  PTT 73
           P T
Sbjct: 585 PVT 587



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -1

Query: 261 TPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEAVTLS 82
           TP +     TS  I Y    + S    T   TT +SV Y+ST        +S+   VT +
Sbjct: 466 TPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 525

Query: 81  PTT 73
           P T
Sbjct: 526 PVT 528


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 241 IVNISVYCVYLAVAFLCVGYNKSAHD 164
           +++IS+ C++  V F C+ YN  + D
Sbjct: 112 VISISIVCIFDLVIFGCLQYNMVSMD 137


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 285 FRFKSTSYTPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKT 118
           F+ K  +     L  +L  AC + I  +  +  D+ K      S +Y S L C  T
Sbjct: 102 FKSKINASPDRPLASALAGACAITISDAFMTPFDVIKQRMQLPSRKYKSALHCATT 157


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +2

Query: 401 KKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYV----LDDKLKAVKQVMFD 568
           K+  TF+  +I  T  + S  +        +++V+EN N++     +D    A   V++ 
Sbjct: 2   KRRATFQCPLIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINKIAYYNVVWR 61

Query: 569 NFNVLHYVTLDNEVFKVKETMEKIDFNVKSITLGS 673
              +  + T + + F V+E      +N     LGS
Sbjct: 62  KITMKKHKTWEGDGFLVREDSNLTLYNSDFTRLGS 96


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 236 NDNRREKGVYEVDLNLNTTVK 298
           N+NR+E  +  VD  LNTTVK
Sbjct: 614 NENRKEYVLRYVDYLLNTTVK 634


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +2

Query: 239 DNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTF 418
           D+ R + V+ +    +   + L++G+ +C      +Y  +N  I  +    +SF   G+F
Sbjct: 274 DSIRLRDVHPIRWVEDKEFQKLEEGKSVCL----RLYQRNNGSILAFPRSCRSFALDGSF 329

Query: 419 KADVISLTKMNGS 457
            +D I    M+G+
Sbjct: 330 HSDEIPNFTMSGA 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,501
Number of Sequences: 5004
Number of extensions: 55431
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)