Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d07f
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M26400-1|AAA28907.1| 2415|Drosophila melanogaster protein ( D.me...    31   1.5  
BT023889-1|ABA81823.1| 1557|Drosophila melanogaster RE03775p pro...    31   1.5  
AE014296-357|AAF47569.1| 2415|Drosophila melanogaster CG1977-PA ...    31   1.5  
BT030453-1|ABP87895.1|  980|Drosophila melanogaster IP18281p pro...    31   2.0  
BT003468-1|AAO39471.1|  528|Drosophila melanogaster RE73615p pro...    31   2.0  
AE014297-3348|AAO41595.1|  528|Drosophila melanogaster CG31145-P...    31   2.0  
AE014297-3347|AAF56153.2|  528|Drosophila melanogaster CG31145-P...    31   2.0  

>M26400-1|AAA28907.1| 2415|Drosophila melanogaster protein (
            D.melanogaster alpha-spectrin mRNA, complete cds. ).
          Length = 2415

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
 Frame = +2

Query: 245  RREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY-VYKTGDKSFKKYGTFK 421
            + E  V +++   NT   + ++ ++    +   + +   + +  +Y   +KS ++    K
Sbjct: 934  KHEALVSDLEAFGNTIQALQEQAKNCRQQETPVVDITGKECVVALYDYTEKSPREVSMKK 993

Query: 422  ADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVT-- 595
             DV++L   N  D +    ND + +       K  +D  L A +Q + DN ++       
Sbjct: 994  GDVLTLLNSNNKDWWKVEVNDRQGFVPAAYIKK--IDAGLSASQQNLVDNHSIAKRQNQI 1051

Query: 596  ---LDNEVFKVKETMEKIDFNVKSITL 667
                DN +   +E   K++  VK+  L
Sbjct: 1052 NSQYDNLLALARERQNKLNETVKAYVL 1078


>BT023889-1|ABA81823.1| 1557|Drosophila melanogaster RE03775p protein.
          Length = 1557

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
 Frame = +2

Query: 245  RREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY-VYKTGDKSFKKYGTFK 421
            + E  V +++   NT   + ++ ++    +   + +   + +  +Y   +KS ++    K
Sbjct: 934  KHEALVSDLEAFGNTIQALQEQAKNCRQQETPVVDITGKECVVALYDYTEKSPREVSMKK 993

Query: 422  ADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVT-- 595
             DV++L   N  D +    ND + +       K  +D  L A +Q + DN ++       
Sbjct: 994  GDVLTLLNSNNKDWWKVEVNDRQGFVPAAYIKK--IDAGLSASQQNLVDNHSIAKRQNQI 1051

Query: 596  ---LDNEVFKVKETMEKIDFNVKSITL 667
                DN +   +E   K++  VK+  L
Sbjct: 1052 NSQYDNLLALARERQNKLNETVKAYVL 1078


>AE014296-357|AAF47569.1| 2415|Drosophila melanogaster CG1977-PA
            protein.
          Length = 2415

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
 Frame = +2

Query: 245  RREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY-VYKTGDKSFKKYGTFK 421
            + E  V +++   NT   + ++ ++    +   + +   + +  +Y   +KS ++    K
Sbjct: 934  KHEALVSDLEAFGNTIQALQEQAKNCRQQETPVVDITGKECVVALYDYTEKSPREVSMKK 993

Query: 422  ADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVT-- 595
             DV++L   N  D +    ND + +       K  +D  L A +Q + DN ++       
Sbjct: 994  GDVLTLLNSNNKDWWKVEVNDRQGFVPAAYIKK--IDAGLSASQQNLVDNHSIAKRQNQI 1051

Query: 596  ---LDNEVFKVKETMEKIDFNVKSITL 667
                DN +   +E   K++  VK+  L
Sbjct: 1052 NSQYDNLLALARERQNKLNETVKAYVL 1078


>BT030453-1|ABP87895.1|  980|Drosophila melanogaster IP18281p protein.
          Length = 980

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 116  SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
            S +   S  +    D + G+F   + N E  + K++      + ++R+K  +E D N   
Sbjct: 770  SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 829

Query: 290  TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
             V+ +       YDD   +Y   +  ++ + TG+     Y TFK
Sbjct: 830  LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 868


>BT003468-1|AAO39471.1|  528|Drosophila melanogaster RE73615p
           protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
           S +   S  +    D + G+F   + N E  + K++      + ++R+K  +E D N   
Sbjct: 318 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 377

Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
            V+ +       YDD   +Y   +  ++ + TG+     Y TFK
Sbjct: 378 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 416


>AE014297-3348|AAO41595.1|  528|Drosophila melanogaster CG31145-PB,
           isoform B protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
           S +   S  +    D + G+F   + N E  + K++      + ++R+K  +E D N   
Sbjct: 318 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 377

Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
            V+ +       YDD   +Y   +  ++ + TG+     Y TFK
Sbjct: 378 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 416


>AE014297-3347|AAF56153.2|  528|Drosophila melanogaster CG31145-PA,
           isoform A protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
           S +   S  +    D + G+F   + N E  + K++      + ++R+K  +E D N   
Sbjct: 318 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 377

Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
            V+ +       YDD   +Y   +  ++ + TG+     Y TFK
Sbjct: 378 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 416


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,375,230
Number of Sequences: 53049
Number of extensions: 526779
Number of successful extensions: 1722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)