Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d02r
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247 30 2.3
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 30 2.3
02_02_0672 - 12814610-12815703,12815743-12816226 29 3.0
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 29 4.0
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 29 4.0
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408... 29 5.3
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 5.3
>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
Length = 722
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 196 GLPSSPARGHREACPDVTHDT-TARPYWSIPTKEIPASLSR 77
G P SP +G+ + +D+ T + YWS+P + + +LSR
Sbjct: 77 GSPDSPFQGNADGYYLSDNDSVTLKDYWSLPVELVDVTLSR 117
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 282 LDMILDLPDLSHFDKTDPTQARLSEWSAWAYRVVQHADIAKHVLMSHTTLLRDLIGRFPL 103
+++I DL L H + TQA LS SA+A + + H ++ L +DL
Sbjct: 188 VNIIKDLTSLEHLKDRETTQANLSLLSAFARQGRFFIGLQSHGQEAYDELFKDLNVTADQ 247
Query: 102 KKF 94
KKF
Sbjct: 248 KKF 250
>02_02_0672 - 12814610-12815703,12815743-12816226
Length = 525
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -1
Query: 651 GLLPWSMLSNMNLGIETYTPYVYQYADTGTCIQISGLEQSELVAISMNSQYKEYSIML 478
G+L W + N ++TYTP V Y G ++ + L +E+ + Y++++
Sbjct: 169 GVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVE-AKLLMAEMERLGCLPNVVTYNVLI 225
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -1
Query: 588 VYQYADTGTCIQISGLEQSELVAISMNSQYKEYSIMLEMPFKIQQILNG-TEHCNEPDRA 412
++ + D TC+Q + ++ ++ S++S+ + +S+ + + T C PD
Sbjct: 569 LFPHNDYVTCVQFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAACYTPDGQ 628
Query: 411 FQKIGLHKGPLRRFTGNATAQVTYPYRLDQS 319
+G HKG RF A ++ ++D +
Sbjct: 629 AAIVGSHKGSC-RFYKTADCKLNQEAQIDMN 658
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 431 QCSVPFSICCILNGISSIIEYSLYWLFI 514
+C V F C +++G+ S + Y W+FI
Sbjct: 803 KCHVLFMACILVHGLISTLGYQTVWVFI 830
>11_01_0521 +
4083594-4083763,4083765-4083963,4084059-4084244,
4085834-4086025,4086979-4087200,4089238-4089444,
4089681-4090082,4090201-4090230,4090307-4090318
Length = 539
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 428 LQCSVPFSICCILNGISSIIEYSLYWLFILIATNSLCSRPDIWMQV 565
L C VPF + +L+ +SS ++ Y ++I + +C P + V
Sbjct: 405 LTCMVPFIVAFLLSMLSSQSDFGEYEKDLVIQVSLVCGLPGVMAMV 450
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/86 (27%), Positives = 34/86 (39%)
Frame = -1
Query: 381 LRRFTGNATAQVTYPYRLDQSEGETYLRLEEENLDMILDLPDLSHFDKTDPTQARLSEWS 202
LR F NA P+ L G+ L + N+D+ DL D+ + D S S
Sbjct: 296 LRDFNKNANENFL-PFSL----GDVLLFGNKYNMDITEDLQDVFLDCRADELVECFSSLS 350
Query: 201 AWAYRVVQHADIAKHVLMSHTTLLRD 124
W YR+ A + + LL D
Sbjct: 351 GWRYRIASMASFFEDCGSQYDMLLED 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,320
Number of Sequences: 37544
Number of extensions: 387891
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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