Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d02r
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical pr... 31 1.2
AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeri... 31 1.2
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF077531-7|AAL27240.1| 418|Caenorhabditis elegans Gex interacti... 29 3.6
AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacti... 29 3.6
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 8.3
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 28 8.3
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 28 8.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 8.3
>Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical
protein F48C11.1 protein.
Length = 364
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 288 ENLDMILDLPDLSHFDKTDPTQARLS--EWSAWAYRVVQHADIAKH 157
+N+DMIL + +S +D+ DP + + + S ++ + H+D+ +H
Sbjct: 227 DNVDMILFIVSMSDYDQLDPEDNKYNRMKQSYEIFKTIVHSDLFRH 272
>AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 364
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 288 ENLDMILDLPDLSHFDKTDPTQARLS--EWSAWAYRVVQHADIAKH 157
+N+DMIL + +S +D+ DP + + + S ++ + H+D+ +H
Sbjct: 227 DNVDMILFIVSMSDYDQLDPEDNKYNRMKQSYEIFKTIVHSDLFRH 272
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
protein F47A4.2 protein.
Length = 3498
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 327 DQSEGETY-LRLEEENLDMILDLPDLSHFDKTDPTQARLSE 208
+ +GE Y ++ +DM+ ++PD+ +FD+TD T +E
Sbjct: 322 ENEDGEIYEFEDYDDFIDMLDEIPDVPYFDETDKTPEAQAE 362
>AF077531-7|AAL27240.1| 418|Caenorhabditis elegans Gex interacting
protein protein10, isoform b protein.
Length = 418
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 151 DVTHDTTARPYWSIPTKEIP 92
D +H TTARPY+S P ++ P
Sbjct: 265 DFSHYTTARPYYSRPNRDDP 284
>AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacting
protein protein10, isoform a protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 151 DVTHDTTARPYWSIPTKEIP 92
D +H TTARPY+S P ++ P
Sbjct: 265 DFSHYTTARPYYSRPNRDDP 284
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 489 SIMLEMPFKIQQILNGTEHCNEPDRAFQKIGLHKGPLRRFTGNATAQVTYPYRLDQSEGE 310
SI++E F + Q L H + +R ++K T NA +++ Q E E
Sbjct: 135 SIVMEDHFLVLQTLPKRVHHLQKERHL----VYKRSAGLLT-NAESKIREEITRLQEEQE 189
Query: 309 TYLRLEEENLDMILDLPDLSHFDKTDPTQARL 214
++ E+ D + +P HF+ T PT A+L
Sbjct: 190 SFCDTSEQLDDPAMTIPAHLHFNYTIPTSAQL 221
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 489 SIMLEMPFKIQQILNGTEHCNEPDRAFQKIGLHKGPLRRFTGNATAQVTYPYRLDQSEGE 310
SI++E F + Q L H + +R ++K T NA +++ Q E E
Sbjct: 135 SIVMEDHFLVLQTLPKRVHHLQKERHL----VYKRSAGLLT-NAESKIREEITRLQEEQE 189
Query: 309 TYLRLEEENLDMILDLPDLSHFDKTDPTQARL 214
++ E+ D + +P HF+ T PT A+L
Sbjct: 190 SFCDTSEQLDDPAMTIPAHLHFNYTIPTSAQL 221
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 190 PSSPARGHREAC---PDVTHDTTARPYWSIPTKEIPASLSRRRIF 65
PSSP+ C P T +ARP S P + +++RR ++
Sbjct: 420 PSSPSSTANVICSTVPQSTASVSARPTQSAPVDPVSQTMARREVY 464
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 190 PSSPARGHREAC---PDVTHDTTARPYWSIPTKEIPASLSRRRIF 65
PSSP+ C P T +ARP S P + +++RR ++
Sbjct: 420 PSSPSSTANVICSTVPQSTASVSARPTQSAPVDPVSQTMARREVY 464
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 489 SIMLEMPFKIQQILNGTEHCNEPDRAFQKIGLHKGPLRRFTGNATAQVTYPYRLDQSEGE 310
SI++E F + Q L H + +R ++K T NA +++ Q E E
Sbjct: 135 SIVMEDHFLVLQTLPKRVHHLQKERHL----VYKRSAGLLT-NAESKIREEITRLQEEQE 189
Query: 309 TYLRLEEENLDMILDLPDLSHFDKTDPTQARL 214
++ E+ D + +P HF+ T PT A+L
Sbjct: 190 SFCDTSEQLDDPAMTIPAHLHFNYTIPTSAQL 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,154
Number of Sequences: 27780
Number of extensions: 347620
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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