Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d02f
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    30   0.23 
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    29   0.53 
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   2.1  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.6  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   8.6  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 137 IGKTQHEFERHIIACHTTDFECFKRQYKSLKDNALLRPGLLPW 265
           IG+ QH   + +  C  T        Y +  D  L  P LLPW
Sbjct: 238 IGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLPW 280


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 206 KRQYKSLKDNALLRPGLLPWSMLSN 280
           +RQY SL  NA+L P LLP  +L++
Sbjct: 561 RRQYGSLSSNAVLMPMLLPLCVLTS 585


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 462 VPFSICCILNGISSIIEYSLYWLFI 388
           VPF + C    +   IEY+LY LFI
Sbjct: 276 VPFVVSCFTYFLGDGIEYALYSLFI 300


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 224 LKDNALLRPGLLPWSMLSNMNLGIETYTPYVY 319
           ++ N   R  + P  ++   + GI+TY+P++Y
Sbjct: 353 IQANEAYRKAINPGRLVIYPDAGIDTYSPFIY 384


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 502  DFLKCTIRFIAVFGSIQYLLYFK 434
            DFL    RF  +F SI+Y +Y+K
Sbjct: 1152 DFLLKLKRFQELFSSIRYAIYYK 1174


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 317 YQYADTGTCIQISGLEQSELVAISMNSQYKEYSIML 424
           Y+Y   GT ++ +GL    L+ ++MN  +   +I L
Sbjct: 834 YRYLCIGTGVRKNGLTTGRLLILTMNKDHDSNAIEL 869


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 98  LCFVILIINTVNSIGKTQHEFERHIIACHTTDFECFKRQYKSLKDNALLRPGLLPWSMLS 277
           L F +L+ NT++ +   Q   E  +   HT    CF  +YK  K ++ L  G +P   LS
Sbjct: 45  LSFSLLLSNTIHDV--RQVILELMLAPPHT----CFHLEYKREKLHSFLEIGQIPHLKLS 98


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 437 KIQQILNGTEHCNEPDRAFQKIGLHKGPLRR 529
           ++Q+ILN   + N PD AFQ+   +K P+ +
Sbjct: 159 QVQKILNAW-NLNHPDCAFQRFFYNKVPVEQ 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,363
Number of Sequences: 5004
Number of extensions: 49760
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)