Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d02f
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0672 - 12814610-12815703,12815743-12816226                       29   2.2  
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    29   2.9  
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    29   2.9  
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    29   3.8  
11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905...    27   8.7  
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783...    27   8.7  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     27   8.7  

>02_02_0672 - 12814610-12815703,12815743-12816226
          Length = 525

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +2

Query: 251 GLLPWSMLSNMNLGIETYTPYVYQYADTGTCIQISGLEQSELVAISMNSQYKEYSIML 424
           G+L W +  N    ++TYTP V  Y   G  ++ + L  +E+  +        Y++++
Sbjct: 169 GVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVE-AKLLMAEMERLGCLPNVVTYNVLI 225


>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +2

Query: 314 VYQYADTGTCIQISGLEQSELVAISMNSQYKEYSIMLEMPFKIQQILNG-TEHCNEPDRA 490
           ++ + D  TC+Q + ++    ++ S++S+ + +S+          + +  T  C  PD  
Sbjct: 569 LFPHNDYVTCVQFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAACYTPDGQ 628

Query: 491 FQKIGLHKGPLRRFTGNATAQVTYPYRLDQS 583
              +G HKG   RF   A  ++    ++D +
Sbjct: 629 AAIVGSHKGSC-RFYKTADCKLNQEAQIDMN 658


>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 471 QCSVPFSICCILNGISSIIEYSLYWLFI 388
           +C V F  C +++G+ S + Y   W+FI
Sbjct: 803 KCHVLFMACILVHGLISTLGYQTVWVFI 830


>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 474 LQCSVPFSICCILNGISSIIEYSLYWLFILIATNSLCSRPDIWMQV 337
           L C VPF +  +L+ +SS  ++  Y   ++I  + +C  P +   V
Sbjct: 405 LTCMVPFIVAFLLSMLSSQSDFGEYEKDLVIQVSLVCGLPGVMAMV 450


>11_04_0393 +
           17185845-17186042,17189342-17189534,17190513-17190598,
           17191123-17191254,17191930-17192094,17192397-17192687
          Length = 354

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +2

Query: 314 VYQYADTGTCIQISGLEQSELVAISMNSQYKEYSIMLEMPFKIQQILNGTEHCNEPDRAF 493
           VY+YA  G C+ ++   +  L A++  ++      +L +P  I ++       ++  RA 
Sbjct: 69  VYEYAKKGACVALTARTEIALRAVAKTARDLGAPDVLVVPADITKV-------DDAKRAV 121

Query: 494 QKIGLHKGPLRRFTGNA 544
           ++   H G L     NA
Sbjct: 122 EETVAHFGKLNHLVANA 138


>10_06_0099 -
           10677024-10677073,10677894-10677998,10678254-10678315,
           10678694-10679197,10679695-10680356,10680695-10680793,
           10680881-10681110,10681227-10681278,10681391-10681577,
           10681661-10681873,10682006-10682175,10683455-10683730,
           10684188-10684643,10685527-10685766,10687517-10687771
          Length = 1186

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 219 LYCRLKHSKSVVWQAIM 169
           ++CR KH+ S+ W AIM
Sbjct: 534 MHCRFKHAPSLPWSAIM 550


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 273  SIDQGRSPGLSSALSFSDLYC 211
            S D+G + G+  A+ F DLYC
Sbjct: 985  SFDRGATLGVREAIGFDDLYC 1005


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,615
Number of Sequences: 37544
Number of extensions: 282486
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)