Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d02f
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   7.9  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   7.9  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = +3

Query: 486 VHFKKSDFIKGHY------EDSLAMPQH 551
           +HF+K DF+K H        D+LA P+H
Sbjct: 884 LHFRKEDFLKSHKNGETSDSDALAFPEH 911


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = +3

Query: 486  VHFKKSDFIKGHY------EDSLAMPQH 551
            +HF+K DF+K H        D+LA P+H
Sbjct: 931  LHFRKEDFLKSHKNGETSDSDALAFPEH 958


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 602 LSTFRLHFDLIGMDT*LVLW 543
           LS FR HF ++G+D+ L  W
Sbjct: 84  LSIFRKHFSILGVDSALACW 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,266
Number of Sequences: 27780
Number of extensions: 277934
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)