Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d02f
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 197 ECFKRQYKSLKDNALL 244
           EC  ++Y+ +KDN LL
Sbjct: 205 ECSNQEYEIMKDNLLL 220


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 522 YEDSLAMPQHKSRIHTD 572
           +  +L +PQH  RIH D
Sbjct: 500 FAKTLPLPQHLPRIHHD 516


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 522 YEDSLAMPQHKSRIHTD 572
           +  +L +PQH  RIH D
Sbjct: 415 FAKTLPLPQHLPRIHHD 431


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 522 YEDSLAMPQHKSRIHTD 572
           +  +L +PQH  RIH D
Sbjct: 734 FAKTLPLPQHLPRIHHD 750


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 374 LVAISMNSQYKEYSIMLEMPFKIQQI 451
           L  I+ N +Y+E +I+  MP  I  +
Sbjct: 82  LYFINKNDKYEENTILTTMPLLINVV 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,886
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)