Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13c24f
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 30 0.79
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 28 2.4
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 28 3.2
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088... 28 3.2
05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024... 27 5.6
03_04_0134 - 17593449-17594702 27 7.3
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 27 7.3
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 26 9.7
02_05_0992 - 33364827-33365750 26 9.7
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 29.9 bits (64), Expect = 0.79
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 113 PDAPKEDNSLNTLAESAKKTIEELREKVE 199
P PKE ++ T+A + +KT EE+R +++
Sbjct: 88 PAQPKESSTATTMAAATEKTAEEIRRELQ 116
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 155 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 289
E A+K E L+ +K +L PE +K+ F +++ +F +F L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 125 KEDNSLNTLAESAKKTIEELREKVESAL 208
+E N L+ L + +K + ELR KVE A+
Sbjct: 49 EESNFLDDLKDGERKALAELRAKVEEAI 76
>05_03_0511 +
14907475-14907933,14907948-14908178,14908520-14908855,
14909571-14910126,14910217-14910424,14910519-14910885,
14910988-14911110
Length = 759
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 176 EELREKVESALAPETVKKNFGTMVDSFNEFYKNLKP 283
EELR V T FGT++DS+N + LKP
Sbjct: 633 EELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLKP 668
>05_07_0224 +
28500745-28500978,28501933-28502332,28502416-28502480,
28502633-28502692,28502865-28503014,28503386-28503541,
28503648-28503785,28503874-28503947,28504172-28504273,
28505415-28505604,28505756-28505830
Length = 547
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 116 DAPKEDNSLNTLAESAKKTIEELREKV 196
+ PK+D ++L ES +T +E+ EKV
Sbjct: 516 EKPKQDRDEDSLTESMDETADEVSEKV 542
>03_04_0134 - 17593449-17594702
Length = 417
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 101 AFVKPDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 229
+ VKP A + + S+ T SA ++ + +A +TVKK
Sbjct: 309 SLVKPPADQPEPSIETSFSSASTSVSPADTMISAATISKTVKK 351
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 238 AKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVFFRSIWFDECMHIGEADSQ 74
AK + N + F FP FL CF+ ++ + A IW E +H+ D +
Sbjct: 199 AKKYPNLFSEESVFGRFPYFLPCFVISV---LAAGACVACIWLPETLHMHHDDKE 250
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 226 LNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVFFRSIWF 110
+ ++RG GG F FL F+ + +FR++WF
Sbjct: 414 VRTIRGNGGMELFEAFLEDFVDCAG----FLDYFRALWF 448
>02_05_0992 - 33364827-33365750
Length = 307
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 177 SIVFFALSASVFRLLSSLGASGLTNACTLARQIA 76
+I++F + + FRL SSL A G + T A +A
Sbjct: 19 AIIYFVIFPNEFRLQSSLAACGDSAPATAADAVA 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,913,217
Number of Sequences: 37544
Number of extensions: 185367
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -