Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13c19f
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25815| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_20260| Best HMM Match : fn3 (HMM E-Value=0) 33 0.25
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34) 31 0.57
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 30 1.7
SB_23135| Best HMM Match : TM_helix (HMM E-Value=0.84) 29 4.0
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 28 5.3
SB_45122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_35819| Best HMM Match : BSD (HMM E-Value=0.86) 28 5.3
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 28 5.3
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 27 9.3
>SB_25815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 73.3 bits (172), Expect = 1e-13
Identities = 27/50 (54%), Positives = 40/50 (80%)
Frame = +2
Query: 254 GTRENPTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGHWYKL 403
GT++NPT+VPS ++ RIVGC+CEE AT I W+ L P+RC+CG++++L
Sbjct: 7 GTKDNPTIVPSGYEERIVGCVCEEDATMIRWMLLKAGPPQRCDCGNYFQL 56
>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1428
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 116 TARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVK 244
T++RG +M+PD + A GL R +L AL G D +N+ K
Sbjct: 814 TSQRGLVTRMLPDIITSACGLCRDQLTALDLG-DPQYNLTSFK 855
>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
Length = 1236
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 227 NMKVVKKSAGTRENPTLVPSCFDARIV----GCICEEHATAI 340
N + +K +GT NPT PSC D R++ GC+ +HA +
Sbjct: 892 NPALPQKQSGTTGNPTPSPSCNDLRVIIHVEGCV-HQHALLV 932
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -3
Query: 414 GFSINLYQCPHSQRRGWSL--CNQSQVMAVACSSQMHPTIRASKQEGTRVGFSRVPADFF 241
G +L CPH GW + CN S + + CS+ P I +G RV F
Sbjct: 753 GNESSLADCPHD---GWGVHSCNHSNDVVLFCSNTSGPDIEVRLSDGNSPAEGRVEV-FH 808
Query: 240 TTF 232
T F
Sbjct: 809 TGF 811
>SB_23135| Best HMM Match : TM_helix (HMM E-Value=0.84)
Length = 346
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 351 QSQVMAVACSSQMHPTIRASKQEGTR 274
QSQV+A A S + P + ASK EG R
Sbjct: 210 QSQVLAQAKSQVVPPIVNASKDEGKR 235
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 249 QQEPVKTQLWYLPALMLVLLDAFVKNTLQ 335
Q E + +QLW++ ALM LLD V L+
Sbjct: 1749 QYEIMMSQLWFVTALMAFLLDFLVMQPLR 1777
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 182 RKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHAT 334
++E+++ N + KV + G +EN + S + C+CE++ T
Sbjct: 202 KEEIISTSEKNTEKIVSKVSEVETGLKENTEKIVSKLSHTSLKCLCEKYTT 252
>SB_45122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 311 IQQYEHQSRKVPELGFHGFLLTSSLPSC*RGHHCRPEGPGVPSFPSQWHV 162
+Q Y R+ P L H L + L SC C PE + S+ WH+
Sbjct: 34 VQGYHGCQRRTPSLVSHRHLFVALLSSCRYKATCGPETSSLVSY---WHL 80
>SB_35819| Best HMM Match : BSD (HMM E-Value=0.86)
Length = 260
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 249 QQEPVKTQLWYLPALMLVLLDAFVKNTLQ 335
Q E + +QLW++ ALM LLD V L+
Sbjct: 86 QYEIMMSQLWFVTALMAFLLDFLVMQPLR 114
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 218 HHCRPEGPGVPSFPSQWHVPRDQASFC 138
H C P GPG PS P P + C
Sbjct: 69 HECHPRGPGRPSSPGNPPRPNRVVTIC 95
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 555 LNTNASRFTCGITANNRQALSRDNHDAFCFGCNT 454
L T T I+ ++R+AL R FC GC T
Sbjct: 497 LKTYRKIHTHFISCSSREALKRKASSCFCHGCGT 530
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,049
Number of Sequences: 59808
Number of extensions: 471865
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -