Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13c16r
(769 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 1.4
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 1.4
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 1.4
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 24 1.8
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 24 1.8
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 2.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 4.1
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 4.1
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 4.1
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 22 7.2
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.5
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 9.5
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 27.5 bits (58), Expect = 0.15
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 246 NISLILFIITKVLF*GCVQCTVCKFI 323
NI +LF+I VL G V C VCK I
Sbjct: 6 NIFPVLFVIINVLLHGQVICFVCKDI 31
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 387 NNYKTKLNTYSHNDNLKMSFFFV*F*DKLRI 479
NNYK N ++N+N K ++ + + +++ I
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 387 NNYKTKLNTYSHNDNLKMSFFFV*F*DKLRI 479
NNYK N ++N+N K ++ + + +++ I
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 387 NNYKTKLNTYSHNDNLKMSFFFV*F*DKLRI 479
NNYK N ++N+N K ++ + + +++ I
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 387 NNYKTKLNTYSHNDNLKMSFFFV*F*DKLRI 479
NNYK N ++N+N K ++ + + +++ +
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPV 124
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 595 YHGPPVRCMHEPIGNM 642
YH P C+HE +G+M
Sbjct: 329 YHTPEPDCIHELLGHM 344
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 485 SVNT*FILKLHKKERHFKIIIVRVC 411
+++T LK HK+++HF+ + VC
Sbjct: 380 TLSTKLTLKRHKEQQHFQPLNSAVC 404
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 164 YIPTCIMLIS*W 199
YIPTC+++I W
Sbjct: 252 YIPTCLIVIMSW 263
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.6 bits (46), Expect = 4.1
Identities = 6/22 (27%), Positives = 14/22 (63%)
Frame = +3
Query: 387 NNYKTKLNTYSHNDNLKMSFFF 452
NNY + ++ Y++N+N ++
Sbjct: 87 NNYISNISNYNNNNNYNKKLYY 108
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.6 bits (46), Expect = 4.1
Identities = 6/22 (27%), Positives = 14/22 (63%)
Frame = +3
Query: 387 NNYKTKLNTYSHNDNLKMSFFF 452
NNY + ++ Y++N+N ++
Sbjct: 325 NNYISNISNYNNNNNYNKKLYY 346
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 21.8 bits (44), Expect = 7.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 342 KH*MLIILYNCEIILNNYKTKLNTYSH 422
KH LY CE Y+TK + +H
Sbjct: 28 KHEQSDTLYVCEFCNRRYRTKNSLTTH 54
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 363 LYNCEIILNNYKTKLNTYSHNDN 431
L N I NNYK N ++N+N
Sbjct: 84 LSNNTIHNNNYKYNYNNNNYNNN 106
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 363 LYNCEIILNNYKTKLNTYSHNDN 431
L N I NNYK N ++N+N
Sbjct: 84 LSNNTIHNNNYKYNYNNNNYNNN 106
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,363
Number of Sequences: 438
Number of extensions: 4160
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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