Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13c16f
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0610 + 19932220-19933176,19933270-19933782 29 2.8
06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179 29 3.7
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 29 3.7
03_02_0627 + 9951391-9951523,9951615-9951684,9951829-9951856,995... 29 3.7
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 4.9
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 28 4.9
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 28 4.9
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 28 6.5
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 28 6.5
01_01_0057 - 435295-435731,435866-435914,436041-436437,437807-43... 28 6.5
03_05_0989 + 29483281-29484612 27 8.6
>07_03_0610 + 19932220-19933176,19933270-19933782
Length = 489
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 566 YVLPSTWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTA 420
YV+P WQVF +AS+ A + H+ + ++ + R +S+ S+ STA
Sbjct: 374 YVIPKGWQVF--WVASVTHMDAAIFHDPDKFLPS---RFDSQSSSPSTA 417
>06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179
Length = 180
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 422 QSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQ 532
+STA + STPT RS++ T +T ++Q+ + SQ
Sbjct: 141 RSTASTTSTPTGRSSTGATGYTSRSSQRRNVGWISSQ 177
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/104 (19%), Positives = 42/104 (40%)
Frame = +1
Query: 265 KCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESF 444
+C HP PT+ R + T + + ++N C + +CR P + + +
Sbjct: 123 ECKYAHPHPTVAVDRDSKVTACA----DSLRNNCFRGRTCRYYHPPPHIQESLLRSIGVE 178
Query: 445 DSDLQECVKTYELDSCCSTANVCGKDAIAALKTCQVDGKTYREG 576
D ++ + + C +AN C + L+ C + + + G
Sbjct: 179 DPKVKMVCRDFTRGRCSRSANECRFLHHSPLEDCAIVCQDFLRG 222
>03_02_0627 +
9951391-9951523,9951615-9951684,9951829-9951856,
9952208-9952254,9952366-9952456,9952738-9952915,
9953626-9953713,9953788-9953869,9954195-9954270,
9954429-9954496,9954623-9954692,9955469-9955553,
9955671-9955764,9956289-9956372
Length = 397
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 217 TPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRSPLP 342
TP P + D F+C D T+ + SY +PLP
Sbjct: 26 TPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLP 67
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 554 STWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTAAQSNCGSPSEMRQ 381
S W+V NA + LP A ++ + N+Y L H +++ S S+ Q + S++ +
Sbjct: 2171 SFWRVDNAFGSFLPGDPAHMRVDGNAYDLRHMLFNDADSSKTSSIGQDSHNDASQIER 2228
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 256 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACS 381
D +C D HP +C SYT ++LI C Q+ S
Sbjct: 338 DIDECQDAHPCTGICINTQGSYTCTCQRGKHLIDGVCKQSSS 379
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +2
Query: 419 PQSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSS 589
P S +PSTP SRS + N V S+ R S R W A R F S
Sbjct: 90 PSSRVSTPSTPASRSVTPVRN--TVTEGHKSSRRITSTRNTDGLWPAMRNLSSSFQS 144
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 440 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKR 565
PS +R+ S T W + +Q A R + +PAKWT+ +
Sbjct: 281 PSHGLARTRSNNTAWQTLGSQ---ADRNKENNMRPAKWTSHK 319
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/85 (24%), Positives = 28/85 (32%)
Frame = +1
Query: 199 YLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQAC 378
Y++ C +P D PDL DPT AS D P P P A
Sbjct: 53 YIDFSCCDVPFFH----ADDGDILPDLEVDPTELLAEFASSPDDEPPPTTSAPGPGEPAA 108
Query: 379 SCRISDGEPQFDCAAVDCVESFDSD 453
+ + + AA + D D
Sbjct: 109 AAGAKEDVKEDGAAAAAAAAAADYD 133
>01_01_0057 -
435295-435731,435866-435914,436041-436437,437807-437906,
438316-438388,439322-439528
Length = 420
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 596 FWGSKISPSLYVLPSTWQVFNAAIASLPQTFAVLQHESNSYV 471
F S + + LPS WQ +AA +P +L H S + +
Sbjct: 79 FTPSADAEQIGALPSGWQKVSAAFNRMPNVHGLLVHHSQNQI 120
>03_05_0989 + 29483281-29484612
Length = 443
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 432 AVDCGAIELRLTVGDAAAARLGARVLDQILG 340
AVD A+ TVGD + +L A++ DQ+ G
Sbjct: 343 AVDLRALMNPATVGDLSRIKLSAKISDQLRG 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,438
Number of Sequences: 37544
Number of extensions: 370929
Number of successful extensions: 1069
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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