Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13c16f
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 38 0.005
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 38 0.005
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 33 0.15
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 33 0.15
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.82
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 31 0.82
AC006684-1|AAF39967.1| 198|Caenorhabditis elegans Hypothetical ... 30 1.4
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 29 2.5
AL033536-6|CAK55187.1| 162|Caenorhabditis elegans Hypothetical ... 29 2.5
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 28 4.4
Z83102-6|CAB05461.1| 417|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z35598-3|CAA84655.3| 525|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 37.9 bits (84), Expect = 0.005
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Frame = +1
Query: 154 AVSSDMAGECNMSAFYLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRS 333
+ S+ A +C+ F CT +D+ +C F C D + ++C+ S ++
Sbjct: 3178 SASAQKASKCSNGQFQ----CTSGECIDDAKVCDRNFDCTDRSDESSLCFIDECSLAEK- 3232
Query: 334 PLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTANVC 513
PL C Q C D + + C DC E F D+ + + ++ C + C
Sbjct: 3233 PL--------CEQKC----MDMKIGYKC---DCFEGFAIDISDQKSCHNVNECYEGISGC 3277
Query: 514 GK---DAIAALKTCQVDG 558
+ D I + K VDG
Sbjct: 3278 SQKCDDKIGSYKCGCVDG 3295
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 37.9 bits (84), Expect = 0.005
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Frame = +1
Query: 154 AVSSDMAGECNMSAFYLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRS 333
+ S+ A +C+ F CT +D+ +C F C D + ++C+ S ++
Sbjct: 3178 SASAQKASKCSNGQFQ----CTSGECIDDAKVCDRNFDCTDRSDESSLCFIDECSLAEK- 3232
Query: 334 PLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTANVC 513
PL C Q C D + + C DC E F D+ + + ++ C + C
Sbjct: 3233 PL--------CEQKC----MDMKIGYKC---DCFEGFAIDISDQKSCHNVNECYEGISGC 3277
Query: 514 GK---DAIAALKTCQVDG 558
+ D I + K VDG
Sbjct: 3278 SQKCDDKIGSYKCGCVDG 3295
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 328 RSPLPQNL-IKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTA 504
+S L +NL + +PC +C D + C C + F+ D+ E K L++ CS
Sbjct: 499 KSSLSENLCLSDPCMNNATCIDVDAHIGYACI---CKQGFEGDICERHKDLCLENPCSNG 555
Query: 505 NVC 513
VC
Sbjct: 556 GVC 558
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 328 RSPLPQNL-IKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTA 504
+S L +NL + +PC +C D + C C + F+ D+ E K L++ CS
Sbjct: 499 KSSLSENLCLSDPCMNNATCIDVDAHIGYACI---CKQGFEGDICERHKDLCLENPCSNG 555
Query: 505 NVC 513
VC
Sbjct: 556 GVC 558
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 256 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNP 363
DAFK P+ HP+P + G S D+ P P + K P
Sbjct: 462 DAFKKPEPHPEPNV---SGGSEEDKIPEPVDAFKKP 494
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 256 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNP 363
DAFK P+ HP+P + G S D+ P P + K P
Sbjct: 462 DAFKKPEPHPEPNV---SGGSEEDKIPEPVDAFKKP 494
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 437 SPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSP 592
+P T T+R+ RT + A RT+ R +P K A RT R + +P
Sbjct: 545 APETVTTRTEPPRTEPPRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAP 596
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 30.7 bits (66), Expect = 0.82
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +1
Query: 367 SQACSCRISDGEPQFDCAAVD-CVE-SFDSD-LQECVKTYELDSC--CST-ANVCGKDAI 528
S SCR + QF C+ D C+ S D + +C + +C C A+ CGK+ I
Sbjct: 207 SDEASCRSKCSKDQFKCSGSDACLPISVKCDGVSDCENESDESNCNKCQKGAHKCGKNCI 266
Query: 529 AALKTC 546
A K C
Sbjct: 267 KASKVC 272
>AC006684-1|AAF39967.1| 198|Caenorhabditis elegans Hypothetical
protein T02H6.9 protein.
Length = 198
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 467 THSWRSESKDSTQSTAAQSNCGSPSEMRQLHAWEHG 360
+ SWR +KD + + CG P R+ ++W G
Sbjct: 113 SESWRGGNKDDVAANNFAAYCGRPEAPRRRYSWIQG 148
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = +1
Query: 325 DRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVD---CVESFDSDLQECVKTYELDSCC 495
D +P+ QN AC C +P DCA V C + +C + + CC
Sbjct: 202 DCAPVQQNPCCQQAQPACDCAPVQQQPACDCAPVQQNPCCQQQAQSTCDCAPVQQ-NPCC 260
Query: 496 STA 504
A
Sbjct: 261 QQA 263
>AL033536-6|CAK55187.1| 162|Caenorhabditis elegans Hypothetical
protein Y53C10A.15 protein.
Length = 162
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 587 SKISPSLYVLPSTWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDS 435
SKI P+L + PS + VFN L + +L+H + + +SKDS
Sbjct: 33 SKI-PNLLMEPSKYFVFNGPFDKLSMDYFILRHPEFQRIAYNVTLKQSKDS 82
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Frame = +1
Query: 235 DNTTICP-----DAFKCPDLHPDPTMCYYRGASYT-DRSPLPQNLIKNPCSQACSCRISD 396
D TT C D P L D C S D + + +P Q C R +
Sbjct: 2054 DGTTACSKKSTADCISLPSLCADKAKCDNSTRSCECDAGYIGDGYVCSPHPQDCVLRDNL 2113
Query: 397 GEPQFDCA--AVDCVESFDSDLQECVKTYELDSCCS 498
P+ C C+ F D +CV +E S CS
Sbjct: 2114 CSPEAVCQNRRCQCLPGFTGDGVKCVSIHERASNCS 2149
Score = 27.5 bits (58), Expect = 7.7
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Frame = +1
Query: 178 ECNMSAFYLELGCTPIP--SVDNTTIC-PDAF--------KCPD-LHPDPTMCYYRGASY 321
+CN F L C P P V T IC P+A +C + C+ + +
Sbjct: 2164 KCNPGYFGNGLCCVPDPLDCVHFTGICHPNAVCNSESRQCQCSSGFSGNGVSCFPQKSCR 2223
Query: 322 TDRSPLPQNLIKNPCSQACSCRIS-DGEPQFDCAAVDCVESFD----SDLQECVKTYELD 486
TD+S +N I P +C CR G+P + C+++ E + SD+ CV +
Sbjct: 2224 TDKSVCAKNAICLPTG-SCICRHGFKGDPFYKCSSLVSKEPANQQDLSDVSSCVTPCDSS 2282
Query: 487 S--CCSTANVC 513
+ C S +C
Sbjct: 2283 TQLCISGECIC 2293
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 434 WSPSTPTSRSASKRTNWTHVAAQQMSAARTQS 529
WSPS+P S +R W+ ++ +S R ++
Sbjct: 195 WSPSSPHSVHCHRRVGWSSSSSSPLSRCRARA 226
>Z83102-6|CAB05461.1| 417|Caenorhabditis elegans Hypothetical
protein C54C8.7 protein.
Length = 417
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 533 AAIASLPQTFAV-LQHESNSYVLTHSWRSESKDSTQSTAAQSNCGS 399
A + LP TFA H N Y T S ++ QST AQ+ CG+
Sbjct: 149 AFVCELPTTFADNCLHNYNGYCYTFSSSPQTFIGAQSTCAQT-CGN 193
>Z35598-3|CAA84655.3| 525|Caenorhabditis elegans Hypothetical
protein F10F2.5 protein.
Length = 525
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 164 RTWRANVTCQLFTWSSAVLLSR 229
R N +C TWSSAV+LSR
Sbjct: 315 RKGEPNESCDAATWSSAVVLSR 336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,104
Number of Sequences: 27780
Number of extensions: 300902
Number of successful extensions: 1108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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