Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13b24f
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 99 3e-22
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 59 7e-10
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 56 3e-09
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 56 5e-09
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.049
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 33 0.049
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 28 1.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.4
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 1.8
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.4
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.4
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.2
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 4.3
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 7.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 7.5
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.5
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 7.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.9
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 9.9
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.9
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 25 9.9
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 25 9.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.9
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.9
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 99 bits (238), Expect = 3e-22
Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 1/172 (0%)
Frame = +2
Query: 86 DIKSVLIVDGVGAKCAELLNAYGIATT-TKAKISKEELLMEIPNHDALVVRSATQVTKEV 262
DIK +L+++ V L G K +S+++L+ +I A+ +RS T++T+ V
Sbjct: 55 DIK-ILLLENVNQSALSNLKDEGYQVEFLKTSMSEDDLVEKIKGVHAIGIRSKTRLTRRV 113
Query: 263 LDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVP 442
L+A L V+G G + +D+D A ++G+ V N+P AN+ S EL ++ LAR V
Sbjct: 114 LEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGD 173
Query: 443 ASTALKAGRWDRALYTGSELAGKTLAILGLGRVGREVATRMYAFGMNIIGFD 598
S L G W++ E+ GKTL I+G G +G +++ A G++++ +D
Sbjct: 174 RSLELHRGEWNKVSSGCWEIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYD 225
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 58.8 bits (136), Expect = 7e-10
Identities = 32/104 (30%), Positives = 50/104 (48%)
Frame = +2
Query: 278 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL 457
KL V G AG +N+DVD A + GV V N P + L + R A +L
Sbjct: 85 KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSL 142
Query: 458 KAGRWDRALYTGSELAGKTLAILGLGRVGREVATRMYAFGMNII 589
+ G+W + L + GK + I+G+G +G+ A ++ G I+
Sbjct: 143 RLGKWRQNLSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIV 186
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 56.4 bits (130), Expect = 3e-09
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +2
Query: 254 KEVLD-AGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLAR 430
KE++D +K + GAG + +DV + +G+ V + P A + ++ LML R
Sbjct: 71 KEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALR 130
Query: 431 HVVPASTALKAGRWDRALYTGSELAGKTLAILGLGRVGREVATRMYAFGMNII 589
L W+ + GKTL ILGLG +G+ +A R AF M I+
Sbjct: 131 GFNQGIFELHKNNWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARAFDMKIV 183
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 56.0 bits (129), Expect = 5e-09
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = +2
Query: 284 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKA 463
K++ AG +N+D+ +A G+ V+ P + + E T L+L L R + A ++
Sbjct: 70 KLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVRE 129
Query: 464 GRWDRALYTGSELAGKTLAILGLGRVGREVATRM-YAFGMNIIGFD 598
++ G +L GKT+ +LG GR+G VA + FG ++ D
Sbjct: 130 DDFNLNGLLGHDLHGKTIGLLGTGRIGGLVAKCLKLGFGCEVLAHD 175
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.049
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -1
Query: 366 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSS 190
+L TP TP +P STS S P P PT+ S T ++ L T TT S + + SS
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSNPLPTTSTSCTTSTS-IPPTGGSS 185
Query: 189 SLEXXXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTTI 76
SL +S + PT ST TD S+ +
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSPL 222
Score = 31.1 bits (67), Expect = 0.15
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -1
Query: 366 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSS 190
+L TP TP +P STS S P P PT+ S T +++ L T TT S + SS
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSSPLPTTSTSCTTSTSI--PTGGSS 241
Query: 189 SLEXXXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTTI 76
SL +S + PT ST TD S+ +
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSPL 278
Score = 30.3 bits (65), Expect = 0.26
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Frame = -1
Query: 555 ATSRPTLPRPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSAL 376
+TS PT ++ + + P + + +P + T + S +++
Sbjct: 232 STSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 291
Query: 375 AP-GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 217
P G TP TP +P STS STP P P + S T S++ L + TT S
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLPSTSTSCTTSTS 344
Score = 29.9 bits (64), Expect = 0.35
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 369 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 217
G TP TP +P STS STP P P + S T S++ L++ TT S
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLLSTSTSCTTSTS 398
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = -1
Query: 420 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*V 241
T N S+ L P +T TP T+ S P + P T S S+++ VT
Sbjct: 528 TTTNCTTSTSVLYTSTP---VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584
Query: 240 AERTTRAS 217
TT +
Sbjct: 585 PVTTTNCT 592
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 32.7 bits (71), Expect = 0.049
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = -1
Query: 504 ASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS-HALSALAPGALITPTPFLPAES 328
+SSLP + S P+ S++ T+ + +V SS H + P L P+ F+ A+
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175
Query: 327 TSMLSTPAPARPTTFSFTPASNTS 256
S L TP P P + S P S
Sbjct: 176 LSRLPTPLP--PPSSSSLPTGTIS 197
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.35
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 3 SVAARRSEEAHTSIKLNNDSTTKPRWSWTLSRF*SSTGLAPSVPNSST 146
SVAA R+ A ++ NND T P+ + +S F S G + + P T
Sbjct: 415 SVAALRARFAKANVSENNDPPTFPKTAAKISSFNSKAGTSFAKPRPFT 462
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Frame = -1
Query: 564 ILVATSRPTLPRPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVS---S 394
I+V++ T+ +P RV + + + P S + + + +++ Q S S
Sbjct: 427 IIVSSYVSTVTQPASTRVQTTTVSSISTSVKQ-PTASVASSSVSVPSSSSVQPQSSTPIS 485
Query: 393 HALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASN 262
+ SA +P + ++ + + +E +S L + + A P+T S TP+S+
Sbjct: 486 SSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSS 529
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 622 ALISRHERVESDDVHAEGVHPSGHLAADPAKAK 524
A+ HE VE V+ + VH G L DP K +
Sbjct: 112 AVFDNHEEVEVFPVYRDPVHDFGFLRFDPKKIR 144
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = -1
Query: 333 ESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSSSLEXXXXXXXXX 154
ES+S+ +T +P +TF T +S +S+ T + ++ S +S+ SSS
Sbjct: 238 ESSSLTNTVSPTE-STFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS--------S 288
Query: 153 XXXLRSSAHLAPTPSTIKTDLMSTT 79
+ S + TPSTI T + T
Sbjct: 289 SGSSQDSTTIDSTPSTIATSTLQPT 313
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 483 RARSHLPAFSAVEAGTTWRARTNI-NVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 307
+ +S +P + V G+ W A I N+ S + ++ ++P TP LP+ + L P
Sbjct: 83 KGKSGVPKKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLP 142
Query: 306 APARPTTFSF 277
+ P F
Sbjct: 143 SITEPIVALF 152
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 500 LAGKTLAILGLGRVGREVATRMYAFGMNII--GFDPFVSADQCAQ--FHCTKME 649
+AGK + G G VG+ +T + + G +I DP ++A Q A F T ME
Sbjct: 212 IAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEVDP-INALQAAMDGFEVTTME 264
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 339 PAESTSMLSTPAPARPTTFSFTPASNTS 256
P+ ++ +PAP T S +PA+NTS
Sbjct: 125 PSSISNSSESPAPINSATASMSPANNTS 152
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 390 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTR 223
++SAL+ + + PT + S S PAP P + S +P ++ V +R
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASR 284
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 489 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 364
+ R R HL + A E T WR + + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 185 KEELLMEIPNHDALVVRSATQVTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVIN 364
KEE +I + +TQ+ + +K + + A +D+I DS G G +N
Sbjct: 660 KEEAQKQISQSLIADQQLSTQIGSVGMGKKQAVKELRKLQAKIDSIIADSMSPMGTGAVN 719
Query: 365 AP 370
+P
Sbjct: 720 SP 721
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -3
Query: 541 DPAKAKDGEGLASELAASVQSPVPP-ASLQRSGSWDHVASQNQHQRAGQLARAQRI---G 374
DP+K+KDG L S V P PP + + +H + + R +L R Q G
Sbjct: 293 DPSKSKDGLNLGS--LTDVVPPQPPQPEHELAALQEHNEAHDAAMRQYELERQQNAMLPG 350
Query: 373 ARSVDHSDAL 344
S+D AL
Sbjct: 351 LASIDGLQAL 360
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 402 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 286
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 438 TTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 307
T +R ++N+ S +A S A ++ +PA STS S P
Sbjct: 524 TPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = -1
Query: 462 AFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 283
++ V+ T + +V ++ LS + P +L + S+S +ST ++P+T
Sbjct: 16 SYLVVDGATPRTFAPSASVSINYGTLSTVFP-SLYRRASTSSSSSSSSISTSHDSQPSTS 74
Query: 282 SFTPASNTS 256
S +P+S ++
Sbjct: 75 SSSPSSTST 83
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 543 PTLPRPRMARVLPASSLPVYRARSHLPAFSAVE 445
P PR PA+ +PV +R H P S ++
Sbjct: 91 PQKSPPRQKHTAPATPIPVSASRHHKPHHSGLK 123
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 360 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLV 250
+TPTP A T+ + A +T S T + TS+V
Sbjct: 34 VTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIV 70
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 390 ALSALAPGALITPTPFLPAESTSMLSTPA 304
+LS + P + +P+P A STS+ S PA
Sbjct: 32 SLSEINPSSFQSPSPSPFASSTSLASKPA 60
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 432 WRARTNINVQVSSHALSALAPGALITPTPFL 340
W+ TN +QV ++ L L P + PFL
Sbjct: 96 WKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 508 ASELAASVQSPVPPA-SLQRSGSWDHVASQNQHQRAGQLA 392
A + + +S +PP+ SL R+G V++QN RA LA
Sbjct: 191 AKKASVKSKSVLPPSKSLARTGLPAEVSTQNNANRAALLA 230
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = -2
Query: 518 RGSCQRARCQCTEPGPTC-----QPSAQWKLGPRGEP 423
+G R T P PTC + + W+ P G+P
Sbjct: 618 KGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQP 654
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/78 (19%), Positives = 31/78 (39%)
Frame = -1
Query: 528 PRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPT 349
P +L S + ++ S LP F ++ +N+ + S ++L+ L++P
Sbjct: 159 PSSTDLLSPDSQKLSKSSSDLPQFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLVSPE 218
Query: 348 PFLPAESTSMLSTPAPAR 295
P + + P R
Sbjct: 219 PLDDNKDIQFIKKPIYTR 236
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 142 QRLRNRHHHQGQDLQGRTSYGDTQPRRSG 228
QR +G+ +GR +YG T P R G
Sbjct: 86 QRENRGSRFRGRGQRGRGNYGHTAPNRRG 114
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 293 GRAGAGVDNIDVDSAGKKGVGVINAPG 373
G+A +N V+S GKKG ++N G
Sbjct: 1344 GKAERFSENAGVESIGKKGKNLLNESG 1370
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -1
Query: 363 LITPTPFLPAESTSMLSTPAPAR------PTTFSFTPASNTSLVT*VAERTTRAS 217
LI PTP + S + + P+PA P+ S P+ ++SL + VA + + S
Sbjct: 292 LIAPTPTISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.9
Identities = 31/130 (23%), Positives = 52/130 (40%)
Frame = -1
Query: 570 AYILVATSRPTLPRPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSH 391
A++ + P P R R L VY +AV + + T+ + ++S
Sbjct: 11 AFLSTVGALPYAPNHRHHRRDDDGVLTVYETILETVYVTAVPGANSSSSYTSYSTGLASV 70
Query: 390 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWL 211
S+ GA T P ES +++T APA ++ + PA+ S + T W
Sbjct: 71 TESS-DDGAS-TALPTTSTESV-VVTTSAPAASSSATSYPATFVSTPLYTMDNVTAPVWS 127
Query: 210 GISIRSSSLE 181
S+ S+ E
Sbjct: 128 NTSVPVSTPE 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,952
Number of Sequences: 5004
Number of extensions: 50386
Number of successful extensions: 210
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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