Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b21f
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   4.7  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    23   8.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    23   8.3  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 252 INNKLFNELG*TIPLSFRIMLLDLIIL 172
           ++ K F  LG  +P++FR +LLD + L
Sbjct: 355 VSGKSFR-LGEVVPITFRFLLLDKVRL 380


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 291  FINVIYYIALYDIINNKLFNELG*TIPL 208
            F+N +  + L DI NN+L   L   +P+
Sbjct: 1440 FLNALLNVWLQDIRNNQLSKVLNGVVPI 1467


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 315 FFFNYKTYFINVIYYIALYDIINNKLFNEL 226
           F  NYK   + V Y  +L DI+  K  N +
Sbjct: 733 FVVNYKKQLMVVAYESSLADILEKKNHNSI 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,125,696
Number of Sequences: 5004
Number of extensions: 18425
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)