Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b21f
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0653 - 18429736-18431379                                         29   0.77 
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683...    26   7.1  

>04_03_0653 - 18429736-18431379
          Length = 547

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 95  RNSLISNHFNVPSARLNFYSLMTVFVLADTH 3
           R+  +SN F  P + L  Y+ +T  VL DTH
Sbjct: 207 RSLAVSNCFLPPPSELRHYAALTKLVLQDTH 237


>11_04_0351 +
           16666398-16666532,16666911-16667048,16667398-16668306,
           16668383-16668511,16668774-16668996,16669085-16669231,
           16669332-16669573,16669660-16669689,16669784-16669865,
           16669968-16670128,16670775-16670898,16671206-16671414
          Length = 842

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 315 FFFNYKTYFINVIYYIALYDIINNKLFNELG 223
           F F  +T FI+V   IA+Y + N+ L   +G
Sbjct: 722 FIFTTRTDFISVATVIAVYGVANSPLPKGIG 752


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,980,222
Number of Sequences: 37544
Number of extensions: 83531
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)