Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b21f
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   2.1  
AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical...    26   5.0  
Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 128 YLFLQCFF**ITSCFNIIKSRSIILNDNGIVYPSSLN 238
           Y+FL CF+    SC   +   ++ L +N +V+PS+++
Sbjct: 5   YVFLICFY--SISCLTDLDILNVALENNILVFPSNIS 39


>AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical
          protein Y48A6B.6a protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 95 RNSLISNHFNVPSARLNFYSLMT 27
          R++   NHF++P+A   FY L T
Sbjct: 22 RHNAQRNHFHIPTANRLFYQLQT 44


>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 315 FFFNYKTYFINVIYYIALYDIINNKL 238
           F  + +TYFI    Y  LYD I N +
Sbjct: 189 FAISLQTYFIYRSVYFGLYDAIRNTI 214


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 151 LINNFLFQYNQI*KHYSK**WNCLSKFIKQFVINYVIQ 264
           ++ N+ ++Y  + KH +K  +  + K +K F    V++
Sbjct: 24  ILPNYFYEYESVLKHITKENFGIIEKTVKHFKTEEVME 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,093,438
Number of Sequences: 27780
Number of extensions: 99243
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)