Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b10r
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 89  DRRLRGRNAAHNRLQVLEGLSF-DIFVVFLVNNN 187
           D +++  +A+HNR+  L  LS  D   +  +NNN
Sbjct: 594 DSKVKTLDASHNRITELSPLSVPDSVELLFINNN 627


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 52  CKISLNAIHFTSRSTAAGSQ 111
           CKI+    H TS S+AAG +
Sbjct: 405 CKINRKVHHTTSSSSAAGGE 424


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 568 LAPVWRDFRGLVKVKMVPYGKSTHDKV 488
           L  VW D++G+V  +++P  ++ +  V
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVV 215


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 74  IALRLILHIQHFFTYKTKPVIRR 6
           +AL++I    H  T+K KP+  R
Sbjct: 562 MALKMIQACSHHLTHKGKPIRMR 584


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 262 VHWMRIFSVYPTPTSCLLELSTCPKTC 342
           + W   F++ P   SCL  ++T    C
Sbjct: 509 IRWNSAFAIAPAVISCLGIVATMAVAC 535


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 262 VHWMRIFSVYPTPTSCLLELSTCPKTC 342
           + W   F++ P   SCL  ++T    C
Sbjct: 599 IRWNSAFAIAPAVISCLGIVATMAVAC 625


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 490 VDGKWSFICHHG 455
           +DG   F+CH+G
Sbjct: 800 IDGNVVFVCHNG 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,507
Number of Sequences: 438
Number of extensions: 4383
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)