Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b10f
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   1.4  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   1.8  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   5.6  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   5.6  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   7.4  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    25   7.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.7  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   9.7  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 404 QPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSRQDV 508
           +PP   EDG   M  +P +  ++   V++S+  DV
Sbjct: 235 EPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDV 269


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 592 TASVLSPYDASRLSPCSLDAHLFSLSDSDILST*VKHV 479
           T SVL  ++ S  S C+L   LF     D+LS   K V
Sbjct: 58  TTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAKRV 95


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 SQHPFYHRTTRADCLLVHWMRIFSVYPTPTSC 499
           S +P    TT  + L ++W++  S + T +SC
Sbjct: 424 SHNPLASLTTDKNDLYINWLKSLSFFQTNSSC 455


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 526 FSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 413
           + + +SDI S   KH+  D+S + W    + +   +++
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIA 471


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 92 VLYQEKKRFNDFFETPAHCNVTTS 21
          VLY E K F D+   P+  ++TTS
Sbjct: 13 VLYPEAKEFFDYPTIPSDSSITTS 36


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +3

Query: 444 LMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTV 623
           + N+ SPD   D     +DK+ ++   +     E G  LLA     TD     +  VP +
Sbjct: 160 IRNEDSPDSWSD--YVALDKLLQNGVNRIMV--EGGAELLAKAFGSTDIDAYVVTIVPKI 215

Query: 624 IINENTTKMSN 656
               NTT++ N
Sbjct: 216 FSCSNTTEIKN 226


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = -2

Query: 601 GLITASVL--SPYDASR----LSPCSLDAHLFSLSDSDI 503
           G I +++L   PYD  R    +  C LD+ L S++D D+
Sbjct: 659 GTIRSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDL 697


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 601 GLITASVLSPYDASRLSPCSLDAHLFSLSDSDI 503
           G + A  +SP D ++LS    ++ LFSLS  ++
Sbjct: 16  GNMAAFDISPLDETKLSGSEKESFLFSLSRDNV 48


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 219 KKFITTQLAPVWRDFRGLVKVKMVPY 296
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,228
Number of Sequences: 5004
Number of extensions: 58837
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)