Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b10f
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 240 LAPVWRDFRGLVKVKMVPYGKSTHDKV 320
           L  VW D++G+V  +++P  ++ +  V
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVV 215


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 546 VHWMRIFSVYPTPTSCLLELSTCPKTC 466
           + W   F++ P   SCL  ++T    C
Sbjct: 509 IRWNSAFAIAPAVISCLGIVATMAVAC 535


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 546 VHWMRIFSVYPTPTSCLLELSTCPKTC 466
           + W   F++ P   SCL  ++T    C
Sbjct: 599 IRWNSAFAIAPAVISCLGIVATMAVAC 625


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 318 VDGKWSFICHHG 353
           +DG   F+CH+G
Sbjct: 800 IDGNVVFVCHNG 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,884
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)