Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13b05f
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   2.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   7.2  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   7.2  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   7.2  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   9.5  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   9.5  

>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 455 CPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAA 574
           CPL  TP+ +HL+D ++   +K GV       G L    A
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA 243


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -2

Query: 249 VSGTRTVIRKSKVQLRHKKFTPNDF*LCCFCSIKITSTDH*LKNFIH*NELSSVTIAEGA 70
           VS T  + +  ++  R K+F P DF    F   +  + +    N +  +EL+S   AE  
Sbjct: 563 VSSTSLLQQLYRINSR-KQFLPEDF----FLMSEYFNLNEFEANALQESELASHAEAEIN 617

Query: 69  ISYSCKNFTDCRCR 28
           I+Y   NF++ R R
Sbjct: 618 ITYKFDNFSESRPR 631


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 398 SPHRDPILACVAIHRRT 348
           SPH +PILA  +  RRT
Sbjct: 334 SPHEEPILASTSADRRT 350


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 373 PASQSIGGHALGSNIRFHFPHLRLFQSREDG 281
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 341 QSVSSDGLRRRQGW-DPDAESL 403
           Q +  D +RR QGW  PD E+L
Sbjct: 354 QQIKEDEIRRAQGWFFPDKEAL 375


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 236 EQLFENQKFNYVTKNLHPM-TSDCV 165
           +QLF+NQ FN + K   PM T+D V
Sbjct: 129 QQLFKNQIFNTMEKGSPPMSTTDFV 153


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 617 TTPPILCERIPRPVRRRYGPVLPNQ 543
           T PP+  E +P  +   +G  LPN+
Sbjct: 342 TLPPVPTESVPNDINIYFGTRLPNE 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,287
Number of Sequences: 5004
Number of extensions: 53504
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)