Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13b05f
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 31 0.60
08_02_1583 + 28036125-28037030,28037411-28037656 31 0.80
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 31 0.80
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 29 3.2
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 29 3.2
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744... 29 3.2
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 4.2
12_02_0189 + 15165485-15168694 28 5.6
10_08_0757 + 20367348-20367560,20367657-20367904,20371406-203717... 28 5.6
03_01_0154 - 1223879-1224274,1224391-1224585 28 5.6
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 28 7.4
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606 27 9.8
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320 27 9.8
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 504 WLKF*KLACYPMRLIWEHWPITPPNRPRNSFAKYGRRRGTCAI 632
W F +L CYP+ + WP PP+ R Y R A+
Sbjct: 133 WRDFLRLHCYPLESFIDQWPSNPPSF-RQVVGTYSREARALAL 174
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 504 WLKF*KLACYPMRLIWEHWPITP 572
W F KLAC P+ + E WP +P
Sbjct: 169 WRDFLKLACMPLAAVVESWPTSP 191
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 318 SHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL 205
+H+ C + GNW+ + + F+ G + V K K+Q+
Sbjct: 139 AHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 29.1 bits (62), Expect = 3.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 229 NCSCTANKGHGGQWLPISHLRVIE 300
+C C +KG + +P+ HLR+++
Sbjct: 557 DCKCEQHKGWSNEMIPLDHLRMVD 580
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 351 DTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL-RHKKFTPN 181
DT++DP++ S HI+ C+ + A+VT V G ++ RKSK L R PN
Sbjct: 204 DTVFDPVALSCGHIY-CYLCSCSA-----ASVTIVDGLKSAERKSKCPLCRQAGVFPN 255
>03_02_0322 +
7448046-7448135,7448402-7448515,7449119-7449437,
7449519-7450453
Length = 485
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 587 PRPVRRRYGPVLPNQSH-RITRQLSKLQPFRHPTDVDPPVLK 465
P +R P+LP++ H TR +K+ +V PP+LK
Sbjct: 310 PAKASQRIDPLLPSKVHIDATRSFTKVSQTEIKPEVQPPILK 351
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 524 GVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCHFRHL 643
G L+ D G + AA++A F+ VW WN+C R L
Sbjct: 274 GDLNRVCDSGPVMEKAAKEATMFL--VWIIGWNICLLRLL 311
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 344 SVSSDGLRRRQGWDPD 391
+V S GLRRR WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782
>10_08_0757 +
20367348-20367560,20367657-20367904,20371406-20371730,
20372299-20372541
Length = 342
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 504 WLKF*KLACYPMRLIWEHWPITPPN 578
W + +L CYP+ WP PP+
Sbjct: 128 WRDYLRLHCYPLHQFVPDWPSNPPS 152
>03_01_0154 - 1223879-1224274,1224391-1224585
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 504 WLKF*KLACYPMRLIWEHWPITPPN 578
W + +L CYP+ WP PP+
Sbjct: 122 WRDYLRLHCYPLHRYLPDWPSNPPS 146
>03_02_0726 + 10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 123 KNFIH*NELSSVTIAEGAISYSCKNFTDCRCR 28
+N H +LSS A+G S SCKN + R R
Sbjct: 954 QNIDHPKKLSSSASADGCGSLSCKNASPARVR 985
>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
Length = 469
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 360 PSEDTLWDPISDSTSHIFAC 301
P +D L+DP S+S +F+C
Sbjct: 169 PQKDVLYDPTKSSSSGVFSC 188
>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
Length = 463
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 521 AGVLSDEIDLGALAHNAAEQAEEFVRKVWE---ASWNVCH 631
AG L DE +LGA E+ + R +W+ WN H
Sbjct: 37 AGELGDEGELGARRARRGEEVQRRFRLLWKFRCVKWNFSH 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,910
Number of Sequences: 37544
Number of extensions: 376554
Number of successful extensions: 970
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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