Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a21f
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   3.4  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    28   4.5  

>Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical
           protein C01G10.10 protein.
          Length = 421

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -1

Query: 285 TFRYQITRAPHIYIGGLSPGARQPLILLNRSNQMATSYIFKQITLFSFVIQALHNILKYT 106
           T    I+   HI+   LS   + P  L+      A  YIF  I+  S    A HN+    
Sbjct: 274 TVARHISSKLHIFFESLSEQEKLPKQLVIGGGVAANQYIFGAISKLS----AAHNVTTIK 329

Query: 105 VIQALCVSNTLIIVRS 58
           V+ +LC  N  +I  S
Sbjct: 330 VLLSLCTDNAEMIAYS 345


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 285 TFRYQITRAPHIYIGGLSPGARQPLILLNRSNQMATSYIFKQITLF 148
           T  ++I+    I+ G LSP A+ P +L  RS  +   + F++ T+F
Sbjct: 146 TADFEISNFKTIFFGTLSPVAKTPRLLNKRSYVVLKLFTFQRKTIF 191


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 324 FASSNSAKF*DHYTFRYQITRAPHIYIGGLSPGARQPLILLNRSNQMATSYIFKQITLFS 145
           F   N     D  TF Y+I R+P  Y G ++P A    +   R  Q+      + +T+  
Sbjct: 416 FPGVNGIMCFDRNTFTYKIVRSPKHYEGSVNPYAGSDSVFFYRGLQIQEMIPAQTLTMMC 475

Query: 144 FVIQA 130
             ++A
Sbjct: 476 NRLEA 480


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 14  ELHNQRMSPTGVVPRDLTIIRVFETHRACITVYFSMLCSACITKENSVICLKMYEVAI*F 193
           E      +PT   P D     + +THR   +++ S   SA I  + S   LK++E+A  +
Sbjct: 215 EFMQMSTTPTDATPVDRMKAYIEKTHRKTASLFASSCRSAAILADGS--DLKLHEIAFEY 272

Query: 194 DR 199
            R
Sbjct: 273 GR 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,121
Number of Sequences: 27780
Number of extensions: 242579
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)