Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a17f
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    31   0.069
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   3.4  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.5  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    24   6.0  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    24   6.0  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 30.7 bits (66), Expect = 0.069
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 54  SLTLMRRHSFSSSKRTTLKPSDKKLISTTRKPLTSS 161
           SL++ RR    SSKR ++K SD++  S+   PL+ S
Sbjct: 10  SLSIRRRQRRGSSKRISMKESDEESDSSENHPLSES 45


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 185 DLYGEEVTKDYQRSYEV 235
           DLYGEE+  DY + YEV
Sbjct: 92  DLYGEEIEIDY-KGYEV 107


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 51  DSLTL-MRRHSFSSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKS 206
           D LTL  RR+  ++   +   PSD++     R+P+ +   T  ++ I  +  S
Sbjct: 487 DMLTLTQRRNRRNNQSSSPPAPSDRRYTMGARRPVQTRGMTDSVIPILEDPMS 539


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 24   SPKKTMKE*DSLTLMRRHSFSSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEK 200
            S + ++   DS   + RH   SS R + KPS   ++STT  P   S +   +     EK
Sbjct: 1320 STRTSLAHQDSRKSLHRHLSRSSSRASKKPS---IVSTT-GPFNESFSAKPVEPCASEK 1374


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 65  YEKT-FVQFLQKDHFEAFGQKIDFHD 139
           Y+ T F Q L  +  +AFG+ + FHD
Sbjct: 347 YDNTEFPQILTAEWHKAFGELLAFHD 372


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 176 DNADLYGEEVTKDYQRSYEV 235
           +  DL+GE + +DYQ++ E+
Sbjct: 67  EGEDLFGEGMERDYQQNLEL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,750
Number of Sequences: 5004
Number of extensions: 22806
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)