Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a17f
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450...    29   1.0  
03_05_0065 + 20450814-20452748                                         29   1.0  
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720...    27   4.1  
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630...    26   7.2  

>07_03_1217 -
           24943466-24943828,24944207-24944374,24944941-24945009,
           24945091-24945197,24945846-24945980,24946090-24946195,
           24946758-24946794,24949795-24949832
          Length = 340

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 345 DRKQDHEEKSGKSPIALGMKVYLSNGIGAAPS 250
           ++KQ  EE++     + G +  L NG G+APS
Sbjct: 250 EQKQQQEEEAASGGASSGNRTCLQNGTGSAPS 281


>03_05_0065 + 20450814-20452748
          Length = 644

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 239 ARRVLGAAPMPFDKYTFMPXAMGL 310
           ARR+  A P+P + YTF P   GL
Sbjct: 98  ARRLAAAVPVPPNAYTFFPVVRGL 121


>04_04_1701 +
           35470535-35471170,35471254-35471403,35471745-35472015,
           35472152-35472262,35472476-35472650,35472748-35473020,
           35473251-35473494,35473623-35473708,35473752-35473968
          Length = 720

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 167 YWXDNAD--LYGEEVTKDYQRSYE 232
           YW  N++  +YG+  T+D+Q  YE
Sbjct: 483 YWLKNSEAGVYGKPATEDFQADYE 506


>03_06_0341 -
           33261210-33261327,33261411-33262057,33262950-33263061,
           33263313-33264097,33264797-33264867,33266323-33266635
          Length = 681

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 206 TKDYQRSYEVFARRVLGAAPMPFDKYTFMPXAMGLLPDF 322
           T +  R Y++    VL   P P  + T M    G++P++
Sbjct: 257 TSETSRIYKIEVHGVLDNLPAPVSRNTAMLERFGMMPEY 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,568
Number of Sequences: 37544
Number of extensions: 139435
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)