Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13a17f
(352 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111731-1|AAI11732.1| 731|Homo sapiens T-cell activation GTPas... 29 5.5
AL035530-3|CAI19233.1| 553|Homo sapiens T-cell activation GTPas... 29 5.5
AL035530-2|CAI19232.1| 731|Homo sapiens T-cell activation GTPas... 29 5.5
AK097090-1|BAC04947.1| 731|Homo sapiens protein ( Homo sapiens ... 29 5.5
AF385430-1|AAM43831.1| 553|Homo sapiens T-cell activation Rho G... 29 5.5
AF385429-1|AAM43830.1| 731|Homo sapiens T-cell activation Rho G... 29 5.5
X13403-1|CAA31767.1| 743|Homo sapiens protein ( Human mRNA for ... 28 7.2
BC052274-1|AAH52274.1| 743|Homo sapiens POU class 2 homeobox 1 ... 28 7.2
BC007388-1|AAH07388.1| 561|Homo sapiens POU2F1 protein protein. 28 7.2
BC003571-1|AAH03571.1| 743|Homo sapiens POU2F1 protein protein. 28 7.2
BC001664-1|AAH01664.1| 743|Homo sapiens POU2F1 protein protein. 28 7.2
AY113189-1|AAM77920.1| 755|Homo sapiens OCT-1 protein protein. 28 7.2
AL136984-5|CAI15171.1| 561|Homo sapiens POU domain, class 2, tr... 28 7.2
AL136984-4|CAI15170.1| 741|Homo sapiens POU domain, class 2, tr... 28 7.2
AL136984-3|CAI15169.1| 743|Homo sapiens POU domain, class 2, tr... 28 7.2
AL136984-1|CAI15167.1| 755|Homo sapiens POU domain, class 2, tr... 28 7.2
>BC111731-1|AAI11732.1| 731|Homo sapiens T-cell activation GTPase
activating protein protein.
Length = 731
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 PDYYSLXTEEN--YERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFH 136
P+ +L +++ +E + L+ KT V+FL + FE FG+ I H
Sbjct: 239 PNMLTLENDQSLSFEAQKDLNNKVKTLVEFLIDNCFEIFGENIPVH 284
>AL035530-3|CAI19233.1| 553|Homo sapiens T-cell activation GTPase
activating protein protein.
Length = 553
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 PDYYSLXTEEN--YERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFH 136
P+ +L +++ +E + L+ KT V+FL + FE FG+ I H
Sbjct: 61 PNMLTLENDQSLSFEAQKDLNNKVKTLVEFLIDNCFEIFGENIPVH 106
>AL035530-2|CAI19232.1| 731|Homo sapiens T-cell activation GTPase
activating protein protein.
Length = 731
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 PDYYSLXTEEN--YERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFH 136
P+ +L +++ +E + L+ KT V+FL + FE FG+ I H
Sbjct: 239 PNMLTLENDQSLSFEAQKDLNNKVKTLVEFLIDNCFEIFGENIPVH 284
>AK097090-1|BAC04947.1| 731|Homo sapiens protein ( Homo sapiens
cDNA FLJ39771 fis, clone SPLEN2001141, weakly similar to
RHO-GTPASE-ACTIVATING PROTEIN 1. ).
Length = 731
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 PDYYSLXTEEN--YERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFH 136
P+ +L +++ +E + L+ KT V+FL + FE FG+ I H
Sbjct: 239 PNMLTLENDQSLSFEAQKDLNNKVKTLVEFLIDNCFEIFGENIPVH 284
>AF385430-1|AAM43831.1| 553|Homo sapiens T-cell activation Rho
GTPase activating protein splice variant 1 protein.
Length = 553
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 PDYYSLXTEEN--YERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFH 136
P+ +L +++ +E + L+ KT V+FL + FE FG+ I H
Sbjct: 61 PNMLTLENDQSLSFEAQKDLNNKVKTLVEFLIDNCFEIFGENIPVH 106
>AF385429-1|AAM43830.1| 731|Homo sapiens T-cell activation Rho
GTPase activating protein protein.
Length = 731
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 PDYYSLXTEEN--YERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFH 136
P+ +L +++ +E + L+ KT V+FL + FE FG+ I H
Sbjct: 239 PNMLTLENDQSLSFEAQKDLNNKVKTLVEFLIDNCFEIFGENIPVH 284
>X13403-1|CAA31767.1| 743|Homo sapiens protein ( Human mRNA for
octamer-binding protein Oct-1. ).
Length = 743
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 446 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 492
>BC052274-1|AAH52274.1| 743|Homo sapiens POU class 2 homeobox 1
protein.
Length = 743
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 446 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 492
>BC007388-1|AAH07388.1| 561|Homo sapiens POU2F1 protein protein.
Length = 561
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 354 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 400
>BC003571-1|AAH03571.1| 743|Homo sapiens POU2F1 protein protein.
Length = 743
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 446 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 492
>BC001664-1|AAH01664.1| 743|Homo sapiens POU2F1 protein protein.
Length = 743
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 446 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 492
>AY113189-1|AAM77920.1| 755|Homo sapiens OCT-1 protein protein.
Length = 755
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 458 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 504
>AL136984-5|CAI15171.1| 561|Homo sapiens POU domain, class 2,
transcription factor 1 protein.
Length = 561
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 354 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 400
>AL136984-4|CAI15170.1| 741|Homo sapiens POU domain, class 2,
transcription factor 1 protein.
Length = 741
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 444 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 490
>AL136984-3|CAI15169.1| 743|Homo sapiens POU domain, class 2,
transcription factor 1 protein.
Length = 743
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 446 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 492
>AL136984-1|CAI15167.1| 755|Homo sapiens POU domain, class 2,
transcription factor 1 protein.
Length = 755
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 84 SSSKRTTLKPSDKKLISTTRKPLTSSATTGXIMQICMEKKSXKITNV 224
SSS + PS L++TT +TSSA T + + S +TN+
Sbjct: 458 SSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNL 504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,462,343
Number of Sequences: 237096
Number of extensions: 766246
Number of successful extensions: 2446
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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