Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a14f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    30   0.32 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   1.7  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   3.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.9  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    25   6.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   6.8  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    25   6.8  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   9.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.0  

>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 472 FLKGGRITEPLLIIQNLPVLTLAKSP-LMMASLCTITLPCKTI 347
           + +GGR+   +  + NLPV T+   P L++    TI +P K +
Sbjct: 676 YFEGGRVPSEVYSLDNLPVGTIVNGPSLIVDKTQTIVVPPKAV 718


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 489 AFFPLQMGDHVFVGENTVVNAAVVGSY 569
           A + L+MGD VFV  +T     VV  Y
Sbjct: 288 AIYHLEMGDSVFVAAHTSAGKTVVAEY 314


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 348 IVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQM 509
           I+ H +   ++   IR     V TG +C+ +K       F  F      FPL++
Sbjct: 248 IIFHRETYTRTITEIRASKVRVLTGNYCLHAKSEEEPLEFSYFFHKYFTFPLRL 301


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 430  QNLPVLTLAKSPLMMASLCTITLP 359
            Q + VL+LA   L+MAS C ++LP
Sbjct: 1039 QMVQVLSLATFTLLMASTCIMSLP 1062


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 VNAAVVGSYVYIGKNVVIGRRC 608
           V AA +  ++Y+ K V +GR C
Sbjct: 55  VRAAAIARHIYLRKQVGVGRLC 76


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 381 HFVRSLYRVKQYSESH 334
           HFVR +Y VK  S+SH
Sbjct: 420 HFVRKVYPVKSPSDSH 435


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 VNAAVVGSYVYIGKNVVIGRRC 608
           V AA +  ++Y+ K V +GR C
Sbjct: 55  VRAAAIARHIYLRKQVGVGRLC 76


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 472 FLKGGRITEPLLIIQNLPVLTLAKSPLMMASL 377
           FLK     E L  +QNLP + L   P  +A L
Sbjct: 69  FLKNQVFMEVLTALQNLPGMALLTVPWFLAEL 100


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 342 QNIVLHGKVIVQSDAIIR--GDLANVKTGRFCIISKGSVIRPPFKKFS 479
           +++   G +++ + A +R  GDL   +   +C++ +G  IR P  + S
Sbjct: 407 ESVFTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEIS 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,850
Number of Sequences: 5004
Number of extensions: 50244
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)