Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13a14f
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186... 39 0.004
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206... 35 0.046
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890... 31 1.00
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 29 2.3
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 29 3.0
11_05_0094 - 18995278-18995757,18995843-18996188,18996774-189968... 28 5.3
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 28 5.3
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522... 28 5.3
04_01_0139 + 1560962-1561094,1561205-1561416,1561481-1561706,156... 27 9.3
>07_01_0250 -
1864990-1865005,1865429-1865502,1865588-1865659,
1865854-1865920,1866365-1866429,1866812-1866843,
1867250-1867326,1867445-1867646,1867733-1867859
Length = 243
Score = 38.7 bits (86), Expect = 0.004
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 327 VLCGSQNIVLHGKVIVQSDAI-IRGDLANVKTGRFCIISKGSVIRPPFKKFSKGV--AFF 497
V+ GS +V I QS I L+N G FC + G+ I F G
Sbjct: 89 VVVGSGAVVGPSVSIGQSTRIWYNVVLSNCSVGEFCTLHNGACIGQDGFGFFVGDDGQML 148
Query: 498 PLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVI 596
+++G+HV +G NT ++ +G YV +G V I
Sbjct: 149 HVKIGNHVEIGANTCIDRGRLGDYVTLGGRVAI 181
>01_02_0006 +
10118766-10118775,10119383-10119526,10120534-10120659,
10120885-10121003,10121355-10121609
Length = 217
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 387 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 566
++RGD NV+ G I S++ S V FP +GD+V VG + V+ V
Sbjct: 49 VLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKV--FPTIIGDNVTVGHSAVLQGCTVED 106
Query: 567 YVYIGKNVVI 596
++G +
Sbjct: 107 EAFVGMGATL 116
>07_01_1029 -
8902771-8902805,8903135-8903256,8904097-8904425,
8905435-8905530,8906126-8906257,8907244-8907348,
8907630-8907803,8908094-8908163,8908263-8908444,
8908669-8908778,8909778-8909882,8909965-8910043,
8910342-8910382,8910511-8910589,8910856-8910966
Length = 589
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 429 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRR 605
C + S+++PP K+ KG+ F P GD ++ A V+ +++ +V+ R+
Sbjct: 193 CFFGELSIVKPPAKEVMKGL-FIPRLNGDGATADAIALLGALVMPHNLFLHSALVLSRK 250
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 507 MGDHVFVGENTVVNAAVVGSYVYIGKNVVI 596
+G+ VGEN V+ +V+G IGKNV+I
Sbjct: 373 VGNGTSVGENCKVSNSVIGQGCNIGKNVLI 402
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 519 VFVGENTVVNAAVVGSYVYIGKNVVI 596
V VGENT++ ++ IGKNV+I
Sbjct: 447 VGVGENTIIRNCIIDKNARIGKNVMI 472
>11_05_0094 -
18995278-18995757,18995843-18996188,18996774-18996837,
18996924-18997078,18997377-18997618
Length = 428
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 369 IVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVA 491
++ +DA+ R D +V G+F ++ G RP F +G+A
Sbjct: 116 LILADALERDDGLSVPPGKFYLVDAGYAARPGFLPPYRGMA 156
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 369 IVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVN 548
+V DAI R D V G+F ++ G +P F +GV + + G + E + N
Sbjct: 211 VVLRDAIERTDGLRVPQGKFYLVDAGYGAKPRFLPPFRGVRYHLNEWGTNPVQNEKELFN 270
>05_07_0248 -
28651807-28651908,28652001-28652061,28652164-28652270,
28652369-28652473,28652556-28652642,28652814-28652894,
28653083-28653155,28653243-28653355,28653439-28653532,
28653633-28653688,28653779-28653865,28653975-28654064,
28654178-28654348,28654752-28654871,28654981-28655193
Length = 519
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 525 VGENTVVNAAVVGSYVYIGKNVVI 596
VGENT +N ++ +G+NVVI
Sbjct: 459 VGENTKINNCIIDMNARVGRNVVI 482
>04_01_0139 +
1560962-1561094,1561205-1561416,1561481-1561706,
1561782-1562029,1562374-1562392,1562747-1562886,
1563134-1563361
Length = 401
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 327 VLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQ 506
VL G + H V+++ D+I R D V G+F ++ G +P F +GV + +
Sbjct: 162 VLAGWETTA-HDAVVLR-DSIERTDGLRVPQGKFYLVDVGYGAKPGFLPPFRGVRYHLNE 219
Query: 507 MGDHVFVGENTVVN 548
G + E + N
Sbjct: 220 WGSNPVQNEKELFN 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,714
Number of Sequences: 37544
Number of extensions: 268087
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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