Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a14f
         (631 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2545|AAF53426.1|  189|Drosophila melanogaster CG10846-P...   225   3e-59
AF224265-1|AAF34709.1|  189|Drosophila melanogaster dynactin sub...   225   4e-59
AE014134-2544|AAN10884.1|  205|Drosophila melanogaster CG10846-P...   180   2e-45
AY075367-1|AAL68214.1|  180|Drosophila melanogaster GM12126p pro...    29   5.2  
AY071041-1|AAL48663.2|  492|Drosophila melanogaster RE13129p pro...    29   5.2  
AE014298-2701|AAF48826.2|  486|Drosophila melanogaster CG6106-PA...    29   5.2  
AE014297-3645|AAF56348.1|  180|Drosophila melanogaster CG7006-PA...    29   5.2  

>AE014134-2545|AAF53426.1|  189|Drosophila melanogaster CG10846-PA,
           isoform A protein.
          Length = 189

 Score =  225 bits (551), Expect = 3e-59
 Identities = 99/127 (77%), Positives = 116/127 (91%)
 Frame = +3

Query: 249 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 428
           ME+ DTYY+K EYVETASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+
Sbjct: 1   MEIPDTYYSKDEYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRY 60

Query: 429 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 608
           C+I K SVIRPP+K+FSKG+AFFP+ +G+HVFVGE  VV+AA +GSYVYIGKN +IGRRC
Sbjct: 61  CVIGKNSVIRPPYKQFSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRC 120

Query: 609 VLKDCCM 629
           VLKDCC+
Sbjct: 121 VLKDCCV 127


>AF224265-1|AAF34709.1|  189|Drosophila melanogaster dynactin
           subunit p25 protein.
          Length = 189

 Score =  225 bits (550), Expect = 4e-59
 Identities = 99/126 (78%), Positives = 115/126 (91%)
 Frame = +3

Query: 249 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 428
           ME+ DTYY+K EYVETASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+
Sbjct: 1   MEIPDTYYSKDEYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRY 60

Query: 429 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 608
           C+I K SVIRPP+K+FSKG+AFFP+ +G+HVFVGE  VV+AA +GSYVYIGKN +IGRRC
Sbjct: 61  CVIGKNSVIRPPYKQFSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRC 120

Query: 609 VLKDCC 626
           VLKDCC
Sbjct: 121 VLKDCC 126


>AE014134-2544|AAN10884.1|  205|Drosophila melanogaster CG10846-PB,
           isoform B protein.
          Length = 205

 Score =  180 bits (437), Expect = 2e-45
 Identities = 87/131 (66%), Positives = 103/131 (78%), Gaps = 19/131 (14%)
 Frame = +3

Query: 294 TASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKK 473
           +ASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+C+I K SVIRPP+K+
Sbjct: 13  SASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRYCVIGKNSVIRPPYKQ 72

Query: 474 FSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVI------------------- 596
           FSKG+AFFP+ +G+HVFVGE  VV+AA +GSYVYIGKN +I                   
Sbjct: 73  FSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIVSYYLLLYPCNPFTFTIFQ 132

Query: 597 GRRCVLKDCCM 629
           GRRCVLKDCC+
Sbjct: 133 GRRCVLKDCCV 143


>AY075367-1|AAL68214.1|  180|Drosophila melanogaster GM12126p
           protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 460 GRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTVC 320
           GRITE     Q + V ++   PL    L   T  CKT   +P +TVC
Sbjct: 119 GRITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTA--DPMTTVC 163


>AY071041-1|AAL48663.2|  492|Drosophila melanogaster RE13129p
           protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 336 GSQNIVLHGKVIVQSDAIIR 395
           GSQN ++HG +IV ++ IIR
Sbjct: 21  GSQNALIHGGIIVDTEGIIR 40


>AE014298-2701|AAF48826.2|  486|Drosophila melanogaster CG6106-PA
           protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 336 GSQNIVLHGKVIVQSDAIIR 395
           GSQN ++HG +IV ++ IIR
Sbjct: 15  GSQNALIHGGIIVDTEGIIR 34


>AE014297-3645|AAF56348.1|  180|Drosophila melanogaster CG7006-PA
           protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 460 GRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTVC 320
           GRITE     Q + V ++   PL    L   T  CKT   +P +TVC
Sbjct: 119 GRITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTA--DPMTTVC 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,155,250
Number of Sequences: 53049
Number of extensions: 489600
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)