Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a14f
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-8|AAF36009.2|  184|Caenorhabditis elegans Hypothetical ...   119   2e-27
CU457741-18|CAM36360.1|  365|Caenorhabditis elegans Hypothetical...    30   1.2  
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    28   6.3  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   6.3  
AC025715-11|AAP13753.1|  516|Caenorhabditis elegans Hypothetical...    27   8.4  
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical...    27   8.4  

>AC024200-8|AAF36009.2|  184|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.14 protein.
          Length = 184

 Score =  119 bits (286), Expect = 2e-27
 Identities = 51/125 (40%), Positives = 84/125 (67%)
 Frame = +3

Query: 249 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 428
           M+L   YY+++E+ +T +GNKV+++  + G+QNI++ GK I++    IRGDLA VK G++
Sbjct: 1   MDLPIVYYDETEWAKTHTGNKVNKKHAIAGTQNILIAGKTIIEEGVTIRGDLATVKIGKY 60

Query: 429 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 608
           C++     IRP  K FSK      + +GD+VF+ E  VVNAA + ++V++G   V+G  C
Sbjct: 61  CVLKSRCNIRPCMKIFSKKPTMCNVMIGDYVFIEEECVVNAAQIYAFVHLGARAVLGNGC 120

Query: 609 VLKDC 623
           V+++C
Sbjct: 121 VIREC 125


>CU457741-18|CAM36360.1|  365|Caenorhabditis elegans Hypothetical
           protein C42C1.5 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +3

Query: 372 VQSDAIIRGDLA---NVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTV 542
           +   A IRG++    +   G  C+I    VI P  K    GV      +     +G  + 
Sbjct: 249 IHPTATIRGNVMVDPSATVGENCVIGPDVVIGPRVK-IEGGVRILHSTILSDSSIGNYSW 307

Query: 543 VNAAVVGSYVYIGKNVVIGRRCVLKD 620
           V+ ++VG   +IG  V I   CV+ D
Sbjct: 308 VSGSIVGRKCHIGSWVRIENICVIGD 333


>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/80 (20%), Positives = 33/80 (41%)
 Frame = +3

Query: 261 DTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIIS 440
           D +  + +Y +  S  K+ R   LC   +  +    +  +  ++ GD + V   R+C + 
Sbjct: 425 DHFKGEKKYEKEDSYQKLLRCATLCSRSHFRVPEFDVPLAKRVVNGDASEVAIMRYCEMI 484

Query: 441 KGSVIRPPFKKFSKGVAFFP 500
           +G      F+K    +   P
Sbjct: 485 RGDGQVDEFRKIMPKIGEIP 504


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/80 (20%), Positives = 33/80 (41%)
 Frame = +3

Query: 261 DTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIIS 440
           D +  + +Y +  S  K+ R   LC   +  +    +  +  ++ GD + V   R+C + 
Sbjct: 425 DHFKGEKKYEKEDSYQKLLRCATLCSRSHFRVPEFDVPLAKRVVNGDASEVAIMRYCEMI 484

Query: 441 KGSVIRPPFKKFSKGVAFFP 500
           +G      F+K    +   P
Sbjct: 485 RGDGQVDEFRKIMPKIGEIP 504


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 473 FFKRRSYHGAFA-DYTKSTCFNISQISSYDGITLYDHFTV*NNILRATE 330
           FF   +Y   FA +  ++ C NI  IS+ D   + +HF +   IL++ E
Sbjct: 401 FFTNLTYSSNFAHEAWRTICLNICSISNIDPKEVLEHFKL-GGILKSLE 448


>AC025715-11|AAP13753.1|  516|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12b protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 402 LANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVG 530
           LAN  T   C +   +VI P F K  K   FF    G H  +G
Sbjct: 76  LANHPTAGGCHLPDFTVITPVFFKGHKTPVFFVANRGHHADIG 118


>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12a protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 402 LANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVG 530
           LAN  T   C +   +VI P F K  K   FF    G H  +G
Sbjct: 747 LANHPTAGGCHLPDFTVITPVFFKGHKTPVFFVANRGHHADIG 789


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,675
Number of Sequences: 27780
Number of extensions: 274617
Number of successful extensions: 663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)