Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13a12f
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 31 0.84
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 1.9
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 28 4.5
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 28 4.5
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 28 4.5
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 28 4.5
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 28 4.5
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 28 5.9
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 28 5.9
U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical pr... 27 7.9
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 417 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATD 560
KS E P E K ++ V +EPAA E+ K + V E KEE P++++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSE 178
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 414 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 575
A+ E +A A+ A + EEP A E++ E + +EEKP A E A
Sbjct: 21 AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEA 74
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/101 (24%), Positives = 38/101 (37%)
Frame = +3
Query: 294 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 473
+++ PA EA D A ++ A A SS +P+ A E
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562
Query: 474 PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 596
PA P +T A AE + P+A + +A +A P
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETP 603
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 147 VSLAMPVAEEKDVVPAQPIL 206
V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 147 VSLAMPVAEEKDVVPAQPIL 206
V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 147 VSLAMPVAEEKDVVPAQPIL 206
V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 147 VSLAMPVAEEKDVVPAQPIL 206
V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 426 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 566
E + E + + K+EEPAA+ E+ + E + E EE+ + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 433 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 534
P L N+LI WK + K ++ KY + LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232
>U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical
protein T20F5.5 protein.
Length = 226
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 447 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 602
KSA K+ P+ + ED++ T+ A+ E S + KP T E SAD + ++
Sbjct: 66 KSASKKLRVPSKESEDTQPTKSDASQTEKSTK-KPPVTLVESSADVTTAVESI 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,483,142
Number of Sequences: 27780
Number of extensions: 169292
Number of successful extensions: 615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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