Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a11r
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.49 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.86 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.86 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.86 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   8.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 194 LILPKITTLMETATNLSTTVHI-TWTLP 114
           L+LPK+T  +E    L+ TV I TW  P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 0.86
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 136  CILRGPSPRPTLLQA-YPFTLVLAVGSKEYL 47
            C+LR  +P P +L+A +    VL V ++ +L
Sbjct: 1106 CVLRASTPAPVVLEAVHASRRVLIVLTRNFL 1136


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 0.86
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 276 MIFVLALLAMANAQGNGYEPIDNRP-YIVNPP 184
           +IFV A  A+ +A G+G++     P +++ PP
Sbjct: 6   LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 0.86
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 276 MIFVLALLAMANAQGNGYEPIDNRP-YIVNPP 184
           +IFV A  A+ +A G+G++     P +++ PP
Sbjct: 6   LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 213 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPLPWCSRW 64
           +N  Y  N   +YN N N Y       Y ++  +  P   P P+ +C  +
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPI-YCGNF 140


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 270 FVLALLAMANAQGNG 226
           FV+ +L   +A GNG
Sbjct: 57  FVIGMLGFVSAMGNG 71


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 102 KVGLGEGPRNMH 137
           K GLG+GPR  +
Sbjct: 562 KTGLGKGPRTTY 573


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 121 PSPRPTLLQAYPFTL 77
           P P+P L + YP  +
Sbjct: 31  PRPKPLLKKEYPLVM 45


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 180 DYNPNGNGYEPIDNGAYYVD 121
           +YN   N Y+P+     Y++
Sbjct: 323 NYNNYNNNYKPLHYNINYIE 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,003
Number of Sequences: 438
Number of extensions: 2545
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)