Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a10f
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0683 + 26259129-26259968                                         31   1.1  
10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010     30   1.4  
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    30   1.9  
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610     29   3.2  
09_03_0217 + 13532018-13532405,13532706-13533175                       29   3.2  
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194...    28   5.6  
05_05_0226 + 23442971-23443857,23444209-23446324                       27   9.9  
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    27   9.9  

>11_06_0683 + 26259129-26259968
          Length = 279

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 391 RCSCDETISFMIVSSTFPHRS*CHALIGVERRQIKVIMPPQGYSICSYHH 242
           RC  D ++S + + ST  H+    A  G ER  ++V+ PP     CS+ H
Sbjct: 112 RCLLDLSLSSLALVSTIDHKLNAAAAAG-ERNTVEVVAPPPPVK-CSHDH 159


>10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010
          Length = 455

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 521 WMFWKATDAEMVKILISGIYLKFIRSXLLRNTLW 622
           ++FWK+ D   V ILI GI+L F+ + ++ N+ W
Sbjct: 128 YVFWKSVDRHNVHILIPGIFL-FV-AGIINNSGW 159


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 254 ANAVPLWWHYNFYLPPFNSDEGV 322
           A+  PL++   FYL PFNSD G+
Sbjct: 332 AHGTPLYYCVGFYLVPFNSDLGL 354


>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
          Length = 913

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 546 ASVAFQNIHGLELILNIHILTECMDQFVPHLLQCGSIQTPDIGLCLACSFELDVHAMKQL 367
           A  A   +H  E++   H + +C+D+F  HLL C S   P     L C  + +V  ++  
Sbjct: 63  ARTAVARLHAEEMLDLEHDIEDCVDRFT-HLLTC-SHSNPSGRTSLVCRVKHEVKKVQSR 120

Query: 366 AS 361
           +S
Sbjct: 121 SS 122


>09_03_0217 + 13532018-13532405,13532706-13533175
          Length = 285

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 269 LWWHYNFYLPPFNSDE 316
           LW+HYN+Y+P   SD+
Sbjct: 22  LWFHYNYYMPLEESDD 37


>02_03_0236 +
           16717320-16717496,16718082-16718240,16719410-16719472,
           16720041-16720205,16721140-16721217,16721318-16721428,
           16721516-16721632,16721713-16721808,16722592-16722662,
           16722780-16723011
          Length = 422

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 263 VPLW-WHYNFYLPPFNSD 313
           VP W W+Y FY+ PF SD
Sbjct: 341 VPSWSWYYPFYVAPFVSD 358


>05_05_0226 + 23442971-23443857,23444209-23446324
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 555 TISASVAFQNIHGLELILNIHILTECMDQFVPHLLQC 445
           T  A  A   +H  E++   H + EC+D+F+ H L C
Sbjct: 61  TADARTAVARLHAEEMLDLAHDVEECVDRFL-HRLTC 96


>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 227 LKRRKVMIAANAVPLWWH--YNFYLPPFNSDEGVTSRPMRKCGRNYHEANCF 376
           L RR+ + +A A P W H   + Y+   +    + + P  +  R YH +  F
Sbjct: 7   LLRRRALYSALASPSWLHDTSSCYICSISGTHSLVNHPNLRLQRGYHNSGKF 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,443
Number of Sequences: 37544
Number of extensions: 335815
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)