Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a10f
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical pr...    28   5.0  
X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin prot...    28   5.0  
Z68301-2|CAA92625.1|  366|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U21323-15|AAA62546.2|  290|Caenorhabditis elegans Hypothetical p...    28   6.7  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical
           protein C14A11.5 protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = +2

Query: 140 KRDHSPKINRKPSE*SNPLLKK*WVSQPVLKRRKVMIAANAVPLWWHYNFYLPPFNSDEG 319
           K+  + K  RK SE +N   K  W+ Q     R+  +AANA+ L   +N  LP     + 
Sbjct: 252 KKKRAKKAERKASEVANAHKK--WLEQKSGSSRQAELAANALRLLQEHN-TLPMTEHSKK 308

Query: 320 VTSRPMRKCGRNYHEANC 373
           V+       G N++  NC
Sbjct: 309 VSGGLSASVGTNFY-GNC 325


>U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical
           protein C05D11.7a protein.
          Length = 621

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 316 LIGVERRQIKVIMPPQGYSICS 251
           L+G+ R +++VI+PP  Y +C+
Sbjct: 91  LLGIVRDELEVILPPNAYEMCT 112


>U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical
           protein C05D11.7b protein.
          Length = 751

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 316 LIGVERRQIKVIMPPQGYSICS 251
           L+G+ R +++VI+PP  Y +C+
Sbjct: 91  LLGIVRDELEVILPPNAYEMCT 112


>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 257 NAVPLWWHYNFYLPPFNSDEGVTSRPM 337
           ++ P WW + F  P FN D+ +   P+
Sbjct: 283 SSCPEWWKFPFVAPDFNDDDLIMKWPL 309


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 576 IPEISIFTISASVAFQNIHGLELILNIHILTECMDQFVPHLLQCGSIQ 433
           +P+ ++ T +  +A + +  L  + N+ I      +F P L QC S+Q
Sbjct: 599 LPKTTVATFAVQIAEKKMKNL--LPNVEIFLPWPQRFTPSLSQCSSVQ 644


>Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 387 HRVQKSKQDISRYLVFVLNRIEASEGRTDPCIQ 485
           +RV++ + D+S  ++ + +R+E +EG TD  I+
Sbjct: 57  NRVERERADLSVQVIALTDRLEDAEGTTDSQIE 89


>Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 387 HRVQKSKQDISRYLVFVLNRIEASEGRTDPCIQ 485
           +RV++ + D+S  ++ + +R+E +EG TD  I+
Sbjct: 57  NRVERERADLSVQVIALTDRLEDAEGTTDSQIE 89


>X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin
           protein.
          Length = 882

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 387 HRVQKSKQDISRYLVFVLNRIEASEGRTDPCIQ 485
           +RV++ + D+S  ++ + +R+E +EG TD  I+
Sbjct: 73  NRVERERADLSVQVIALTDRLEDAEGTTDSQIE 105


>Z68301-2|CAA92625.1|  366|Caenorhabditis elegans Hypothetical
           protein W01B6.2 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 480 CMDQFVPHLLQCGSIQTPDIGLCLACSFEL 391
           CMD+ +PHL      Q PD  +   C +++
Sbjct: 272 CMDKVMPHLASLDYYQRPDYHMIFKCFWQV 301


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 82  NTIL*NFNITCLQQKATPELFSGS 11
           NTIL NF++ C+ ++    +F+GS
Sbjct: 50  NTILINFSVICMSEEKISTMFNGS 73


>U21323-15|AAA62546.2|  290|Caenorhabditis elegans Hypothetical
           protein C45G9.1 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 480 CMDQFVPHLLQCGSIQTPDIGLCLACSFEL 391
           CMD+ +PHL      Q PD  +   C +++
Sbjct: 205 CMDKLMPHLASLNYYQRPDDHMIFKCFWQV 234


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 117 SWLNADIRSGITAPKLIVSPPNEVT 191
           SWL    RS I+AP +I+SP + +T
Sbjct: 52  SWLTKLTRSEISAPAVIISPRHLIT 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,986
Number of Sequences: 27780
Number of extensions: 309633
Number of successful extensions: 684
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)