Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13a08f
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 222 2e-58
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 213 1e-55
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 209 1e-54
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 0.97
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 5.2
05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194 28 6.9
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 28 6.9
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 28 6.9
01_06_0095 - 26395104-26395871,26396040-26396486 27 9.1
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 222 bits (543), Expect = 2e-58
Identities = 100/204 (49%), Positives = 138/204 (67%)
Frame = +3
Query: 3 AFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDD 182
A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT +
Sbjct: 71 AKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTRE 130
Query: 183 GVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 362
G WDLVGNN P+FFIRD FP +H+ K NP +H+++ DF + PE++H +LF
Sbjct: 131 GNWDLVGNNFPVFFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLF 190
Query: 363 GDRGIPDGYRHMNGYGSHTFKLVNSQGVGYWVKFHYKTNQGIKNLSVDRAGELASTDPDY 542
D GIP YRHM+G G +T+ LVN G ++VKFH+K G+K+L D A + T+ +
Sbjct: 191 DDIGIPADYRHMDGSGVNTYTLVNRAGKSHYVKFHWKPTCGVKSLLDDEAVTVGGTNHSH 250
Query: 543 SIRDLYNSIAKGDYPSWTFYIQVM 614
+ +DLY+SIA G++P W +IQ +
Sbjct: 251 ATQDLYDSIAAGNFPEWKLFIQTI 274
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 213 bits (519), Expect = 1e-55
Identities = 96/204 (47%), Positives = 133/204 (65%)
Frame = +3
Query: 3 AFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDD 182
A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +
Sbjct: 83 AKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTRE 142
Query: 183 GVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 362
G WDL+GNN P+FFIRD FP IH K NP +H+++ +DFL+ PE++H +LF
Sbjct: 143 GNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLF 202
Query: 363 GDRGIPDGYRHMNGYGSHTFKLVNSQGVGYWVKFHYKTNQGIKNLSVDRAGELASTDPDY 542
D GIP YRHM+G+G +T+ V +VKFH+K G+ L D A + + +
Sbjct: 203 DDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEATLVGGKNHSH 262
Query: 543 SIRDLYNSIAKGDYPSWTFYIQVM 614
+ +DLY+SIA G++P W ++QV+
Sbjct: 263 ATQDLYDSIAAGNFPEWKLFVQVI 286
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 209 bits (511), Expect = 1e-54
Identities = 98/204 (48%), Positives = 133/204 (65%)
Frame = +3
Query: 3 AFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDD 182
A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +
Sbjct: 71 AKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTRE 130
Query: 183 GVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 362
G +DLVGNN P+FFIRD FP +H K +P T++++ DF + PE++H +LF
Sbjct: 131 GNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLF 190
Query: 363 GDRGIPDGYRHMNGYGSHTFKLVNSQGVGYWVKFHYKTNQGIKNLSVDRAGELASTDPDY 542
D GIP YRHM G+G +T+ L+N G + VKFH+K G+K L D A + T +
Sbjct: 191 DDVGIPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSH 250
Query: 543 SIRDLYNSIAKGDYPSWTFYIQVM 614
+ +DL +SIA G+YP W YIQ +
Sbjct: 251 ATKDLTDSIAAGNYPEWKLYIQTI 274
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 237 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 112
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 210 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 118
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194
Length = 68
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 252 NSGIMLDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLHQLL 103
N ++ + L + W Q P + Y T++++ GHE YQ+ LL
Sbjct: 7 NPCVLDNKLEQPWPQKLQPKPIVTDVYSTVKRDGHGHEMYQEFRFRRWLL 56
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 198 VGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGI 377
V N P++ +D T + + RN H + F T+ P+ + L+Y G G
Sbjct: 243 VVNGIPLYDFKDITQ----LGRESRNTLRHSHEQGQQVVFETITPDDVATLIYTSGTSGT 298
Query: 378 PDG 386
P G
Sbjct: 299 PKG 301
>02_03_0084 -
15041261-15041437,15041625-15041765,15042857-15042946,
15043111-15043201,15043953-15044155,15045361-15045438,
15045535-15045651,15046111-15046161,15046405-15046500,
15046726-15046742,15046938-15047064,15050585-15050681,
15051565-15051638,15051910-15051993,15052099-15052290,
15054191-15054319,15055607-15055639,15055747-15055843,
15055940-15055990,15057494-15057564,15058305-15058455,
15058625-15058703,15059265-15059346,15060335-15060335,
15060565-15060620,15060969-15061018,15061511-15061580
Length = 834
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 402 GYGSHTFKLVNSQGVGYWVKFHYKTNQGIKNLSVDRAGELASTDPDYSIRDLYNSIAKGD 581
G G H F+ V + GY+ K + ++ L+VDR + + + + Y+ + K
Sbjct: 758 GIGEH-FEGVKAHNFGYFKKL-----KALRELAVDREFQKHNLSEKHMVMCAYSVLVKNA 811
Query: 582 YPSWTF 599
Y W +
Sbjct: 812 YSDWKY 817
>01_06_0095 - 26395104-26395871,26396040-26396486
Length = 404
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -2
Query: 519 VHLLCQLISF*SPG*SYSGILPSTQHLENSQA*MYGNHIHSYVCSHQEYHGLQTSKEVDG 340
V +L + F + G TQ L +++ M G +H Y +EY + E G
Sbjct: 286 VRMLSPMSHFENGTWDQGGNCKRTQPLRSNETVMEGRDLHFYTAQMEEYRAAEKVAEAKG 345
Query: 339 WSLVL 325
++L
Sbjct: 346 RRMML 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,569
Number of Sequences: 37544
Number of extensions: 398562
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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