Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a07r
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 219 FKCIARKRAFYVTYSSFINYY 157
           + C+A  RA  VT+++ +N Y
Sbjct: 497 YSCMAENRAGKVTHAARLNVY 517


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 219 FKCIARKRAFYVTYSSFINYY 157
           + C+A  RA  VT+++ +N Y
Sbjct: 497 YSCMAENRAGKVTHAARLNVY 517


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 342 YFNMLFNYD*LVRYPLQTAN*MHDNLSPILNALLHVHAK----ITRPWITLSF*FYAMK 506
           Y ++L NY+ LVR  + T++ +   +   L+ L+ V+ K     T  W+  S+  Y ++
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 342 YFNMLFNYD*LVRYPLQTAN*MHDNLSPILNALLHVHAK----ITRPWITLSF*FYAMK 506
           Y ++L NY+ LVR  + T++ +   +   L+ L+ V+ K     T  W+  S+  Y ++
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,901
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)