Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13a07f
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.61 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   5.6  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   9.9  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.9  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    25   9.9  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   9.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.9  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 576 GLIFWLEVFLARSRFRNDFSGSTGPAYFCAASSLTSL 466
           G+IF LE  LA S F + F+GS    + C+ASS+ +L
Sbjct: 230 GVIFALEQ-LASSSFPSLFTGSIWYEFLCSASSVVAL 265


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 283 NDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMRPEL--YGEPPAMEGLASA 456
           NDL P  +   EE NQ+G    +DQ F   Q+     N+ +  +   + EP    G   +
Sbjct: 31  NDLHP-TMFEGEESNQNGGSVLIDQAFQDIQNPNVNSNMHLENQFQHFHEPNKESGAFGS 89

Query: 457 F 459
           +
Sbjct: 90  Y 90


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +3

Query: 93  PSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQRWQYHQ*TARKLGSNKR**PISL-LE 269
           PS   T +    +   R    P C RSA +    R++YH   ++ L  +    P SL   
Sbjct: 622 PSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYHTSLSKSLEHSST--PASLQAT 679

Query: 270 QE*QKRFGTLPACPQRRRK 326
           +     F   P  PQ  +K
Sbjct: 680 KTPSPSFVLEPGIPQEYKK 698


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 226 NWDQTKDDNRSLFLNKSDKNDLE 294
           NW +  D   SL     +KNDLE
Sbjct: 546 NWQKETDKKNSLVNEAEEKNDLE 568


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 205 TISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQ 345
           T ++ P ++  T  DN ++ +   D    EPY L L +   Q+ YD+
Sbjct: 24  TTNKFPSDYVPTVFDNYAVTVMIGD----EPYTLGLFDTAGQEDYDR 66


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 256 SLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRF 363
           SL  ++  KND + +PL    + N + Y  +++ +F
Sbjct: 20  SLQSSRKRKNDFDDFPLNKGLKTNNNDYSGSIEPKF 55


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 172 VPTPSNNKDGSTISELPENWDQTK 243
           V  PSN+ D + ++E P N ++TK
Sbjct: 546 VTEPSNDADKAIVAEGPNNEEETK 569


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 420 WRTTGNGRTRFC 455
           WRTT +G T FC
Sbjct: 857 WRTTSSGETSFC 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,418
Number of Sequences: 5004
Number of extensions: 53972
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)