Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13a07f
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.18
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 32 0.42
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 32 0.42
AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical ... 30 1.3
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related (u... 29 3.0
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 29 3.0
AL023844-10|CAA19530.3| 503|Caenorhabditis elegans Hypothetical... 29 3.0
AL023844-9|CAH04760.1| 512|Caenorhabditis elegans Hypothetical ... 29 3.0
AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein. 29 3.0
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 29 3.9
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 29 3.9
U58764-1|AAB00723.2| 191|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 28 6.9
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 6.9
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 27 9.1
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 27 9.1
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 27 9.1
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 157 LAVSAVPTPSNNK--DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQ 330
L SA+ NNK D E+ + + DN+S SD++D++PY + EG +
Sbjct: 403 LTFSAMDKEENNKLFDYLNKKEIKIR-NSHRIDNKSAGYGSSDEDDIDPYKSTVKAEGRE 461
Query: 331 ---DGYDQTVDQRFD 366
D D++ D+ +D
Sbjct: 462 QDDDSDDESTDEDYD 476
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 31.9 bits (69), Expect = 0.42
Identities = 27/105 (25%), Positives = 45/105 (42%)
Frame = +1
Query: 157 LAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDG 336
L +S +P +++ STIS + W + +D L+ + D DL Y ++ + + +
Sbjct: 105 LPISPLPYHIVSRNNSTISYIVSTWGEVQDKRSVLYKKRFD--DLTYYEACVASKIDSEI 162
Query: 337 YDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQR 471
+ F QS L NL L P LAS+ D +R
Sbjct: 163 MWNVCEYIFPQIQS---LSNLDKNAVLRNFSPKWSLLASSIDFER 204
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 31.9 bits (69), Expect = 0.42
Identities = 27/105 (25%), Positives = 45/105 (42%)
Frame = +1
Query: 157 LAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDG 336
L +S +P +++ STIS + W + +D L+ + D DL Y ++ + + +
Sbjct: 107 LPISPLPYHIVSRNNSTISYIVSTWGEVQDKRSVLYKKRFD--DLTYYEACVASKIDSEI 164
Query: 337 YDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQR 471
+ F QS L NL L P LAS+ D +R
Sbjct: 165 MWNVCEYIFPQIQS---LSNLDKNAVLRNFSPKWSLLASSIDFER 206
>AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical
protein K09D9.11 protein.
Length = 861
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 197 MAVPSVNCQKIGIKQKMITDLSS*TRVTKTIWNLTRLPSAKKEI 328
+ P V + IG+ K++ DL R K + N+T P K+I
Sbjct: 286 LQTPMVLSESIGLSAKVLEDLEKTRRNRKRLLNITEFPDEVKQI 329
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = -2
Query: 569 SSGLRFFLPDPD-FVTTLVAAPAPPTF-----VPLPLLR 471
+S L +F+P P +V L AP PPTF VPLP+++
Sbjct: 732 NSKLPYFIPPPQGYVGPLPPAPPPPTFRVAPQVPLPVVQ 770
>U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 17 protein.
Length = 180
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 175 PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDL 291
P P NN G T+ L E D+ K+D+ ++ L + DK ++
Sbjct: 67 PVPVNNVVGFTLKLLIEWCDKHKEDDPAIALAEKDKKNI 105
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/85 (29%), Positives = 35/85 (41%)
Frame = +1
Query: 178 TPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQ 357
TP+N D S IS + + K+ +R L KS P P S Y T +
Sbjct: 156 TPTNQMDRSKISFVIKPQINLKNCSRELLSPKSSIFSSSPKPKETS-----PFYKTTPTK 210
Query: 358 RFDSPQSNGELDNLIMRPELYGEPP 432
F S N +L+NL ++ PP
Sbjct: 211 TFSSTPKNLKLENLKSPEDIKSPPP 235
>AL023844-10|CAA19530.3| 503|Caenorhabditis elegans Hypothetical
protein Y48A6B.6a protein.
Length = 503
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 90 CPSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQ 194
CP I+ + +Y I P++Y + CC + D +++
Sbjct: 160 CPVDIIEELEYWRIIPDQYLASCCCAQQIDDDDEE 194
>AL023844-9|CAH04760.1| 512|Caenorhabditis elegans Hypothetical
protein Y48A6B.6b protein.
Length = 512
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 90 CPSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQ 194
CP I+ + +Y I P++Y + CC + D +++
Sbjct: 196 CPVDIIEELEYWRIIPDQYLASCCCAQQIDDDDEE 230
>AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein.
Length = 180
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 175 PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDL 291
P P NN G T+ L E D+ K+D+ ++ L + DK ++
Sbjct: 67 PVPVNNVVGFTLKLLIEWCDKHKEDDPAIALAEKDKKNI 105
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
protein K04D7.5b protein.
Length = 1287
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 148 TAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSL-FLNKSDKNDLEPYPLALSEEG 324
T +V+ +PT N D + ++T+ DN +L L+ D D E Y + +
Sbjct: 237 TRAESVAPIPTLDNVDDDGFYRDFVTGINRTEKDNDNLEVLDTEDDPDDEDYNVCADDGL 296
Query: 325 NQDGYDQT 348
N + +D+T
Sbjct: 297 NVEDWDET 304
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
protein K04D7.5a protein.
Length = 1338
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 148 TAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSL-FLNKSDKNDLEPYPLALSEEG 324
T +V+ +PT N D + ++T+ DN +L L+ D D E Y + +
Sbjct: 237 TRAESVAPIPTLDNVDDDGFYRDFVTGINRTEKDNDNLEVLDTEDDPDDEDYNVCADDGL 296
Query: 325 NQDGYDQT 348
N + +D+T
Sbjct: 297 NVEDWDET 304
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 181 PSNNKDGSTISE-LP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 354
P NK G I + LP WD D R L L+K+D YP+A E + + +++
Sbjct: 1435 PKINKAGRCIGQSLPWVAWDALCDLRRQLMLDKNDAVLRGKYPIAARLE---EEIENSIE 1491
Query: 355 QRFD 366
++FD
Sbjct: 1492 RQFD 1495
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 181 PSNNKDGSTISE-LP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 354
P NK G I + LP WD D R L L+K+D YP+A E + + +++
Sbjct: 1435 PKINKAGRCIGQSLPWVAWDALCDLRRQLMLDKNDAVLRGKYPIAARLE---EEIENSIE 1491
Query: 355 QRFD 366
++FD
Sbjct: 1492 RQFD 1495
>U58764-1|AAB00723.2| 191|Caenorhabditis elegans Hypothetical
protein M03E7.4 protein.
Length = 191
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 459 ECRSESFHCRWFAIKFRPHDK 397
EC E +HCRW + FR + K
Sbjct: 62 ECSEEFYHCRWQSDGFRTYRK 82
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +1
Query: 139 TAITAVLAVSAVPTPSNNKDGSTISELP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALS 315
T +T V VP P +N G+T +P E W + N + + EP P ++
Sbjct: 276 TPLTQVPITGQVPMPFDNTIGNTFDGIPLEPWMKEPSPPTDDVANITSEG--EPMPRLIT 333
Query: 316 EEGN---QDGYDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQRR 474
EE + + + ++RF N ++L + P + EP +E + + RR
Sbjct: 334 EEEQYQIESNHVEAREKRFAHRLFNITSEDLYVEPTV--EPMEVEMPGAPRETARR 387
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 152 RSLLSAQCRRL----RTTKMAVPSVNCQKIGI--KQKMITDLSS*TRVTKTIWNLTRLPS 313
R+ S CR+ + TK P ++CQ IG+ +Q T +S + KTI +
Sbjct: 225 RACPSCPCRKRLMLGKRTKRDAPGLHCQPIGLLGQQSPPTLIS---KPVKTIIKSKSRVA 281
Query: 314 AKKEIKMAMTKRLTNASTHH 373
K ++++TK+L S+ H
Sbjct: 282 GTKTSQVSVTKKLIEQSSDH 301
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 551 FLPDPDFVTTLVAAPAPPTFVPLPLLRRCK 462
FL D D T + PAPPT +P+ CK
Sbjct: 1032 FLADADEQTKPLLKPAPPTTLPVGKQEPCK 1061
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 551 FLPDPDFVTTLVAAPAPPTFVPLPLLRRCK 462
FL D D T + PAPPT +P+ CK
Sbjct: 1032 FLADADEQTKPLLKPAPPTTLPVGKQEPCK 1061
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 551 FLPDPDFVTTLVAAPAPPTFVPLPLLRRCK 462
FL D D T + PAPPT +P+ CK
Sbjct: 1032 FLADADEQTKPLLKPAPPTTLPVGKQEPCK 1061
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,869
Number of Sequences: 27780
Number of extensions: 319901
Number of successful extensions: 1032
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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