Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13a06f
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 189 4e-49
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 161 1e-40
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 117 2e-27
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 103 3e-23
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 84 2e-17
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 65 8e-12
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.1
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 28 1.4
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce... 26 4.4
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 7.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 7.6
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 189 bits (460), Expect = 4e-49
Identities = 86/180 (47%), Positives = 122/180 (67%)
Frame = +2
Query: 107 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 286
++Y+ G+WV A S F V NP + +A V DM ++ + A+ A AF +++++ KE
Sbjct: 25 RSYIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKE 84
Query: 287 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 466
R ILRRW+DL +N D+LA ++T E+GK L +AKGEV Y F++WFA A I+G+
Sbjct: 85 RYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSS 144
Query: 467 PSPWPNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSALA 646
S P +I+ + P+GVV +ITPWNFP AMITRKVGA +AAGCT VI+P+ +TP +ALA
Sbjct: 145 MSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALA 204
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 161 bits (390), Expect = 1e-40
Identities = 72/183 (39%), Positives = 120/183 (65%), Gaps = 1/183 (0%)
Frame = +2
Query: 107 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 286
Q++V G+W+ + +N F V NPA ++ +V D+ ++ + A+ A+ AF+T+K+ T +
Sbjct: 19 QSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQ 78
Query: 287 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 466
RS++L RW +L +N D+L +++T E+GKPL++A+ EV + +L+W+A A G++
Sbjct: 79 RSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVA 138
Query: 467 PSPWPNKQILLT-RNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSAL 643
PS ++ L++ + P+GV ++ITPWNFP AMI RK GA +AAGCT + P+ TP L
Sbjct: 139 PSSLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCL 198
Query: 644 AAV 652
V
Sbjct: 199 GLV 201
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 117 bits (281), Expect = 2e-27
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Frame = +2
Query: 113 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERS 292
Y+NGEW K+ + +P+ + V+A+V K+ A+ +A AF+TWK E+
Sbjct: 24 YINGEWHKSAET--WETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEKG 81
Query: 293 RILRRWFDLCEKNTDNLAEVITAESGKPL-AEAKGEVAYGNSFLEWFADSARHINGEIIP 469
+L + +L EK+ D LA + +SGKPL + A+G+V + L + A A I G++IP
Sbjct: 82 ELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIP 141
Query: 470 SPWPNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSAL 643
+ P K R P+GV I PWN+P M K+ +AAG +IK +E TPLS L
Sbjct: 142 T-GPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLL 198
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 103 bits (246), Expect = 3e-23
Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 4/181 (2%)
Frame = +2
Query: 113 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQT---WKDTTAK 283
++N + V + V++P+ + ++ EV D D +D A+ A AFQT W+ ++
Sbjct: 26 FINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSA 85
Query: 284 ERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEI 463
+R R L R D E+N + LA + T ++GK + A+G+V ++ A G+
Sbjct: 86 QRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQT 145
Query: 464 IPSPWPNKQILLTRN-PLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSA 640
I + K+ TR+ P+GV I PWNFPF M K+ +A G T ++K +E TPLSA
Sbjct: 146 IETDI--KRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSA 203
Query: 641 L 643
L
Sbjct: 204 L 204
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 84.2 bits (199), Expect = 2e-17
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 6/186 (3%)
Frame = +2
Query: 104 NQAYVNGEWVKAKSNLVFAVH--NPADDSVVAEVPDMDSKDAQNALLTASNAFQT--WKD 271
N +++G++V + NPA + ++ + +KD +A+ A N F++ W
Sbjct: 21 NSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGIWAK 80
Query: 272 TTAKERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHI 451
K+R +LR+ + + + LA + T GKP A ++ E++A+ A
Sbjct: 81 WPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETD 140
Query: 452 NGEI-IPSPW-PNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSED 625
N + +P P P R P GV+ VITPWNFP M K+ +A+G V+KPSE
Sbjct: 141 NPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSEL 200
Query: 626 TPLSAL 643
P S L
Sbjct: 201 APWSCL 206
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 65.3 bits (152), Expect = 8e-12
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 7/163 (4%)
Frame = +2
Query: 170 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRILRRWFDLCEKNTDNLAE 349
P D S++ EV + D +++ A A + WK T+ ER L+ + +N D AE
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 350 VITAESGKPLAEAK-GEVAYGNSFLEWFADSARHINGEIIPSPWPNKQI------LLTRN 508
+ ++GK L +A GE+ + W + + P+ PN + +
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQ---SLRPTKRPNSLLTSYKGGYVKYE 126
Query: 509 PLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLS 637
PLGV++ + WN+P + + + AG V+K SE T S
Sbjct: 127 PLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWS 169
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 125 EWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASN 250
E + NL+ AVH AD E PD+D + Q L +N
Sbjct: 565 ELQQQNQNLLSAVHELADRMEKDEKPDLDGAEIQEETLIKAN 606
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 404 YGNSFLEWFADSARHINGEIIPSPWPNKQI 493
+G L FA +A+ +NG I+ +PW +++
Sbjct: 410 HGALILSEFAGAAQSLNGSIVINPWNTEEL 439
>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 65 MYINQCRRLHLLRNQAYVNGEWVKAKSNLVFAVHNPADDSV----VAEVPDMDS 214
+Y++ R +LLR+Q V+ ++ + V A N DD V + PDMD+
Sbjct: 112 LYLSSPERQYLLRHQQIVHRHYMDSFLREVPAKMNKLDDKVGNLSMVASPDMDT 165
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.6
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +2
Query: 71 INQCRRLHLLRN-QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTAS 247
I+ RL+LLR QA W + +SN D +++ VPD ++ + A +
Sbjct: 175 IDDYNRLNLLRTFQAGSPYLWTRWQSN---------DPHLISSVPDYSARPRKYAHVPIL 225
Query: 248 NA----FQTWKDTTAKERSRILRRWFD 316
N +KD RSR + WFD
Sbjct: 226 NLCLWNHAYYKDYGLLNRSRYIDTWFD 252
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 170 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 286
P DD V EV + K ++ + +NAF+ + D + E
Sbjct: 61 PEDDEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVE 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,426
Number of Sequences: 5004
Number of extensions: 67149
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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