Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p24r
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   145   3e-36
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   145   3e-36
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.64 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   3.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.0  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          24   7.9  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  145 bits (351), Expect = 3e-36
 Identities = 73/112 (65%), Positives = 81/112 (72%)
 Frame = -2

Query: 337 LGPQHLVGETVXGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 158
           +GPQ   GE V GVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 157 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGR 2
           AAQD A KCK +GITALHIK+RA           GAQ          M+IGR
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGR 116


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  145 bits (351), Expect = 3e-36
 Identities = 73/112 (65%), Positives = 81/112 (72%)
 Frame = -2

Query: 337 LGPQHLVGETVXGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 158
           +GPQ   GE V GVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 157 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGR 2
           AAQD A KCK +GITALHIK+RA           GAQ          M+IGR
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGR 116


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 235 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 134
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 263 RSCY*FIRP--GNYRPCHWWHEGE 198
           RSC+  +R    N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 26  SKSPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLCYILCR 157
           SK     L++R   +   S+SSTE    L+  GR++ + + L Y LC+
Sbjct: 24  SKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSDNDSVLIYDLCK 71


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 306 CXV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 154
           C V  T S++ + +  ++          VSLV    +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,541
Number of Sequences: 5004
Number of extensions: 26605
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)