Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p24r
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 156 7e-39
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 156 7e-39
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 155 1e-38
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 7e-07
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 0.81
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 3.3
06_03_0265 - 18923597-18924367,18924459-18924704 28 3.3
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 4.3
05_03_0656 - 16676406-16676654 27 4.3
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 5.7
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 5.7
06_03_0263 - 18910447-18911217,18911311-18911556 27 5.7
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 27 5.7
09_04_0520 + 18286435-18287279,18287818-18288697 27 7.6
08_02_1092 + 24267737-24268641,24269005-24269884 27 7.6
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 27 7.6
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 156 bits (378), Expect = 7e-39
Identities = 81/128 (63%), Positives = 90/128 (70%)
Frame = -2
Query: 385 MAPRXNKVXXEEVQVTLGPQHLVGETVXGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 206
M+ R +E VTLGP GE V GVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 205 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 26
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA GAQ
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 25 XXSMKIGR 2
MKIGR
Sbjct: 121 RSGMKIGR 128
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 156 bits (378), Expect = 7e-39
Identities = 82/128 (64%), Positives = 91/128 (71%)
Frame = -2
Query: 385 MAPRXNKVXXEEVQVTLGPQHLVGETVXGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 206
M+ R + EE VTLGP GE V GVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 205 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 26
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA GAQ
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
Query: 25 XXSMKIGR 2
MKIGR
Sbjct: 120 RSGMKIGR 127
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 155 bits (376), Expect = 1e-38
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2
Query: 355 EEVQVTLGPQHLVGETVXGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEAS 176
+E VTLGP GE V GVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+S
Sbjct: 33 KEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESS 92
Query: 175 PYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGR 2
PYAAMLA+QDVA++CK LGITALHIKLRA GAQ MKIGR
Sbjct: 93 PYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 150
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -2
Query: 220 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 128
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 220 VTGGMKVKADRDEASPYAAMLAAQDVA 140
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 0.81
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 113 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSXKYEDWP 3
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 100 LCARPLCQEFCISLLHPV 153
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 245 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 150
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 128 NSWHNGLAHKAPCYWWKQNKDPWSWC 51
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 158 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 66
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 295 AHIFASFNDTFVHVTDLSGRETIARVT 215
+H+++ D V++TDLS RE++ T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 174 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPXTVSPT 320
G SSR+ F+ PP R S P V + +S A + P VSPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISFG-ASSESKPTIVSPT 907
>06_03_0263 - 18910447-18911217,18911311-18911556
Length = 338
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 245 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 150
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPTE------VRLKCSVANT 336
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 267 HSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPT 169
H+F + A +L P L A +LT++++HP+
Sbjct: 1691 HAFCQFVTGAPRLPPGGLAALNPKLTIVRKHPS 1723
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 291 CATPXTVSPTKCWGPR 338
C P V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 291 CATPXTVSPTKCWGPR 338
C P V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 115 LCQEFCISLLHPVPPT*QRRVTLHHGQPSPSCHQ 216
+C E + LLHP P + H QP SC Q
Sbjct: 815 VCLETGLRLLHPFMPYITEELWQHLPQPKYSCRQ 848
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,188
Number of Sequences: 37544
Number of extensions: 215985
Number of successful extensions: 541
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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