Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p24r
         (407 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   4.3  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    22   7.5  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    22   9.9  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 298 HXTLFRPLNAGARGSPGPP 354
           + T +R + +  RGSPGPP
Sbjct: 431 YGTGYRVVMSRLRGSPGPP 449


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 127 FCISLLHPVPPT*QRRV 177
           FC+S +   PPT + RV
Sbjct: 644 FCVSKVRAAPPTPRERV 660


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical
          protein protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 62 WSWCSVCTSGSCS 24
          W  C VC S  CS
Sbjct: 35 WMLCEVCCSRKCS 47


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,206
Number of Sequences: 2352
Number of extensions: 8011
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32922351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)