Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p24r
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   161   2e-40
AY887912-1|AAX34424.1|  150|Caenorhabditis elegans anion transpo...    28   3.0  
AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate perme...    28   3.0  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    26   9.1  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  161 bits (391), Expect = 2e-40
 Identities = 84/129 (65%), Positives = 92/129 (71%), Gaps = 1/129 (0%)
 Frame = -2

Query: 385 MAP-RXNKVXXEEVQVTLGPQHLVGETVXGVAHIFASFNDTFVHVTDLSGRETIARVTGG 209
           MAP R  K   E+  V+LGPQ   GE + GVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 208 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXX 29
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA           GAQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 28  XXXSMKIGR 2
               MKIGR
Sbjct: 121 ARAGMKIGR 129


>AY887912-1|AAX34424.1|  150|Caenorhabditis elegans anion
           transporter SULP-6 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 315 PTKCWGPRVTWTSSXXTLFXLGAMVSXFSL 404
           P   W PR TW S+    F  G MVS  S+
Sbjct: 82  PITMWLPRYTWKSNFLVDFLGGLMVSVLSV 111


>AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate permease
           family protein 6 protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 315 PTKCWGPRVTWTSSXXTLFXLGAMVSXFSL 404
           P   W PR TW S+    F  G MVS  S+
Sbjct: 82  PITMWLPRYTWKSNFLVDFLGGLMVSVLSV 111


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 150 CAANIAA*GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNV 269
           C+A++A  GDA+ ++ F + P    +I+     + T  NV
Sbjct: 495 CSADVAVVGDANDQTVFKYDPATKYSIIMATGDTSTKGNV 534


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 150 CAANIAA*GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNV 269
           C+A++A  GDA+ ++ F + P    +I+     + T  NV
Sbjct: 495 CSADVAVVGDANDQTVFKYDPATKYSIIMATGDTSTKGNV 534


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 236 GNYRPCHWWHEGE 198
           GN RP  WW EG+
Sbjct: 38  GNGRPAQWWQEGD 50


>Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical
           protein C54G4.2 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 232 TIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 134
           T  ++  G+ ++  RD+ +PY  M A QD +EK
Sbjct: 260 TTGKMDDGI-IEESRDQLNPYDTMAALQDRSEK 291


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 146 CSREMQNSWHNGLAHKAPCYWWKQNKD 66
           C+R+    W N +A      WWK+N +
Sbjct: 492 CTRDKIFEWMNNVATDFRSEWWKKNNN 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,428,762
Number of Sequences: 27780
Number of extensions: 173237
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)