Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p24r
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.76 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 177 DASSRSAFTFMPPVTRAIVSRPDKSVT 257
           +A  R  FT+   + ++I+  PDK +T
Sbjct: 500 NADVRPPFTYASLIRQSIIESPDKQLT 526


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect(2) = 1.5
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -1

Query: 95  PCYWWK 78
           PC WWK
Sbjct: 540 PCCWWK 545



 Score = 20.2 bits (40), Expect(2) = 1.5
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -1

Query: 230 YRPCHWW 210
           Y PC WW
Sbjct: 538 YYPCCWW 544


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect(2) = 1.5
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -1

Query: 95  PCYWWK 78
           PC WWK
Sbjct: 487 PCCWWK 492



 Score = 20.2 bits (40), Expect(2) = 1.5
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -1

Query: 230 YRPCHWW 210
           Y PC WW
Sbjct: 485 YYPCCWW 491


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 176 TLRCYVGGTGCSREMQ 129
           T+RC+ GG   S E Q
Sbjct: 296 TVRCFTGGPRKSHESQ 311


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 8  NLHT*XSKSPKCRLSTR 58
          N+HT  SK P C +  R
Sbjct: 24 NVHTRPSKEPICNICKR 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,653
Number of Sequences: 438
Number of extensions: 1840
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)