Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p22f
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    72   5e-14
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   6.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   7.9  

>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 38/97 (39%), Positives = 56/97 (57%)
 Frame = +2

Query: 164 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 343
           EE + +Y  +F+    D +E+++G+N+    D+VP   +I+ AL A RRVND+  AVR  
Sbjct: 45  EEINTKYNDFFSNVQ-DQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRIF 103

Query: 344 EACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPEEL 454
           E  K K   K  E Y   ++E+KP   ELGI   E+L
Sbjct: 104 EGIKVKLPTK--EQYQAYVKELKPVCNELGIVLKEDL 138


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 138 DLRTDTALTF-TAGTNDLLRTFANAPDADFNIFAKY 34
           D+ T+T   F ++  N  L++F + PD++ N+F  +
Sbjct: 125 DVFTETNSGFRSSNQNSSLKSFQSVPDSNVNVFGGF 160


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -2

Query: 563 KIKVNNKKLFFNFTTA*VNSFTCGKHFLKRVLAYRSQAPQVCQYP 429
           K K N KK   N   + ++S TC  + + +++ +     ++ +YP
Sbjct: 814 KSKTNTKKCRDNLNLSGLSSSTCNANSVNKLMKHVMMGNEMMKYP 858


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 393 TSFKRSSLLSPNWVLTHLRSLATISQNSL*KVFTTCKAVDLCCSK 527
           +  +R +L + + ++THL  L T++ N          ++ LC S+
Sbjct: 577 SQLRRVNLATLSAIITHLNRLITLTPNKETFTINLANSLSLCISR 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,149
Number of Sequences: 5004
Number of extensions: 49238
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)