Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p22f
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical...   142   1e-34
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    27   7.2  

>AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical
           protein Y37D8A.14 protein.
          Length = 174

 Score =  142 bits (345), Expect = 1e-34
 Identities = 60/105 (57%), Positives = 84/105 (80%), Gaps = 2/105 (1%)
 Frame = +2

Query: 164 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 343
           ++FDN +  Y NR +IDGWE+RK +++L   D++PDPK+++AAL ACRRVND+ALAVRF+
Sbjct: 42  DKFDNHFINYLNRPEIDGWEVRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFL 101

Query: 344 EACKDKCGNKVNE--IYPYIIQEIKPTLTELGIDTPEELGYDKPE 472
           EA K KCG + N   +Y YI+++++P L ELGIDTPE+LGY +PE
Sbjct: 102 EAIKIKCGAQKNRDTVYAYIVKQVEPVLKELGIDTPEQLGYGEPE 146


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 164 EEFDNRYEAYFNRKDIDGWEIRKGMNDL-CGMDLVPD 271
           E F+ +  ++   KD+DG+E R+G++D  C   L+ D
Sbjct: 259 ENFEKK-NSFRRHKDMDGYECRRGISDTKCQCHLLQD 294


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 117 APYLYGDHTEVQWKVMKNSITD 182
           APYL+ +H E+ W V+ + + D
Sbjct: 184 APYLFDEHHEIYWPVVISLLVD 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,730
Number of Sequences: 27780
Number of extensions: 279783
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)