Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p19f
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      189   1e-48
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    30   0.98 
04_01_0618 - 8094991-8097288                                           28   5.2  
02_05_0634 + 30513920-30514136,30514674-30514717,30515547-305155...    28   5.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  189 bits (461), Expect = 1e-48
 Identities = 82/117 (70%), Positives = 101/117 (86%)
 Frame = +2

Query: 167 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 346
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 347 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 517
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVE 117


>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 163 YDPSLKDFIKSN*LNVGLSFSLYISYPVIKFKD 65
           YD  L D  K+  L + LS  +Y+  PVIKFKD
Sbjct: 366 YDCILDDETKNIFLPIHLSEEVYVGDPVIKFKD 398


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 358 RSIQVQDKEGALHCSRRALHRPICLLW 438
           R  Q+ D++  + C+ R   +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>02_05_0634 +
           30513920-30514136,30514674-30514717,30515547-30515595,
           30515663-30515835
          Length = 160

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 147 KIL*NLINST*D*AFRYIFHIRL*NLKTVYFDLI 46
           K+  N++ S  +    YIFH  + NLK VY+ L+
Sbjct: 127 KLSINVLQSNTERPVYYIFHFLVHNLKAVYYGLV 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,330
Number of Sequences: 37544
Number of extensions: 259260
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)