Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p18r
(713 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 23 3.8
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 22 5.0
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 5.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 246 TIMQDLIYYVLH*FVNYIFGWH 311
T M+D I+Y H FV+ +F H
Sbjct: 394 TAMRDPIFYRWHAFVDDVFQEH 415
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 625 YRKNTNLINLSIKNKASP*DKAPNYN 702
YR N L++L ++ KAPNY+
Sbjct: 494 YRLNKPLMSLITSSEVRQPGKAPNYS 519
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 618 FFTFTQAVRIIDNLVFSFFYNL-TIIVLY**FYLKV*AYTVKAPK 487
+ T T +RI +F+F Y + I+++Y +Y ++ ++ V K
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIY--YYSQIVSHVVNHEK 243
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 397 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 431
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 397 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 431
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 397 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 431
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 397 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 431
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 397 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 431
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 397 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 431
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 465 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 499
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 322 KLHNVNTNYKCITILLKALSPNKKIHSRWRFIRFI 426
+LH + + IT +K + +I S W+F +
Sbjct: 465 ELHTILKELRFITDRMKKADESDEIISDWKFAAMV 499
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,357
Number of Sequences: 438
Number of extensions: 3238
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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